Gene DET0535 details

Gene Information

• Locus tag: DET0535
• Symbol: holB
• ID: 3230147
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides ethenogenes 195
• Kingdom: Bacteria
• Replicon accession: NC_002936
• Strand: +
• Start bp: 488923
• End bp: 489942
• Gene Length: 1020 bp
• Protein Length: 339 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637120101
• Product: DNA polymerase III, delta prime subunit
• Protein accession: YP_181279
• Protein GI: 57234678
• COG category: [L] Replication, recombination and repair
• COG ID: [COG2812] DNA polymerase III, gamma/tau subunits
• TIGRFAM ID: [TIGR00678] DNA polymerase III, delta' subunit

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTGGCAGA TAATAGGTCA GGACAAGGCA GTCTCCTTCC TCTGTAACAG CCTCAATCAG 
GACAAGCTTT GCCACGCCTA TGTGTTTTAC GGCCAGTCCG GGGTGGGTAA GAAACGGATG 
GCACTTAGTT TTGCTCAGGC GCTAAATTGT CAGGCTGCCT CACCCCCATG TCAGGAATGC 
CCGGTGTGTG AGCGCATCAT GGCCGGAAAC TTTCCGGATG TTATCCATAT AGAGCTTCTT 
TCAGCCGAAG ATTCCTCTGA CGGCAAAGCT AAGGCCGAAA TAGGGGTTAA ACAGGTAGAG 
GATATCCAGC ACGCCGCCAG TTTGCCCCCG TTTGAGGGCA AGTACAAGGT TTTTATTATC 
CATCAGGCTG AAAAGCTGTC AGTAGAATCT TCAAACCGCC TTCTGAAAAC GCTGGAAGAG 
CCGGGTTCTC AAAATATCTT TATTTTGCTG ACCGCTGATA AATCACTCCT GCTGCCCACG 
GTTTTATCCC GTTGCCAGAT TTTGGAATTA AAATATGCCG AAACCGGTCT TATCCATGAG 
GCATTTATTA AGCAAGGTTT GGATGAAGAA AAAGCTGAAC TTTTGTCTCA CCTGAGTTAT 
GGCCGGGTGG GCTGGGCTAT GGAAGCAGCC TCAAACCCCG AAATTTTGGA AGAACGTAAA 
GCTAAGATTG ATAAGATTAT GCGGGTACTG GGGCAGGACG AGGAAGACCG CTTTAATTAT 
GCCGCTGATG TTTCAAATCT GTTTGGTAAA AACCGGGCAG AGGCTGAAGA GGTACTGGAT 
ATGTGGCTGG GGCTTTTTCG GGATATGCTG CTACTTAAGG CTGATGCCGG CCAAAACATG 
ACTAATATTG ATTATAAAGA TATACTATAT CAGGCCTGTG GCGGGCTTGG GCTTGTGGAT 
ATACGTGCGG GTATAGATAA TATACTTAAG GCCCAAAGTC AGCTGCGGGC AAATGCCAAC 
CCCAGGCTTT GTCTGGAAGT GCTTATGCTC AGTTTGCCCT TGGTAAAGGA AGGACTATAA 

 

Protein sequence

MWQIIGQDKA VSFLCNSLNQ DKLCHAYVFY GQSGVGKKRM ALSFAQALNC QAASPPCQEC 
PVCERIMAGN FPDVIHIELL SAEDSSDGKA KAEIGVKQVE DIQHAASLPP FEGKYKVFII 
HQAEKLSVES SNRLLKTLEE PGSQNIFILL TADKSLLLPT VLSRCQILEL KYAETGLIHE 
AFIKQGLDEE KAELLSHLSY GRVGWAMEAA SNPEILEERK AKIDKIMRVL GQDEEDRFNY 
AADVSNLFGK NRAEAEEVLD MWLGLFRDML LLKADAGQNM TNIDYKDILY QACGGLGLVD 
IRAGIDNILK AQSQLRANAN PRLCLEVLML SLPLVKEGL