| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET0480 |
|---|
| Symbol | rpsC |
|---|
| ID | 3230141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides ethenogenes 195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002936 |
|---|
| Strand | + |
|---|
| Start bp | 448836 |
|---|
| End bp | 449672 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637120046 |
|---|
| Product | 30S ribosomal protein S3 |
|---|
| Protein accession | YP_181224 |
|---|
| Protein GI | 57234672 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0092] Ribosomal protein S3 |
|---|
| TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGACGCA AAGTTCATCC AATCGGGTTT AGACTTGGCA TTATTAAAGA CTGGAGTGCC
AAATGGCATG CCAGTGATAA GGGTTTTGCC GAATGCCTCA CCGAAGACCT TAAGCTTCGC
AAGGCTATTG CCAAGAAGTA TGTAGATGCC GCTATCTCTC AGGTAGATAT TGAGCGCCAG
TCCAACAAGG TGACTGTTTC TGTCCGGACA GCCCGGCCGG GTATTGTTAT CGGACGGGGC
GGTCAGCGTG TTGATGAAAT GCGCCATTTC CTTGAGGAGC TTATCGGCAA AAAGGTACAG
CTGAATATTG TTGAAATATC TCAGGCTGAG CTTGACGCCT TCCTGGTTGC CCGGAGTGTG
GCAGAGCAGA TTGAACGCCG TGTTGCTTAC CGGCGTGCCA TGAAGCAGGC TATCTTCCGC
AGTATGCAGG CTGGTGCCAA GGGTATTAAA GTATGTGCCT CAGGACGTTT GGGCGGCGTT
GAAATTGCCC GGCGTGAGGT AATGCACGAA GGGCGTGTTC CTTTGCATAC TCTTCGGGCT
GACATTGATT ACGGCTGCAC CAGGGCTCAC ACCGCCCTTG GAGATATAGG CATAAAGGTA
TGGGTATACC GCGGTGATAT CCTGCCTGAA GCAAAAGAAC AATCTGAACC CGAAGTAACG
GAAATGGCTG CTGTTATGGC TGATGCTCCT GCTGCCGCTG TTGCCGAAGC CAAGGTTGCT
GATACTGTGG CCAAACCCAA GAGGGTTACA AAAAAGGCCG AAGCTGAGGC TTCCGCTGAG
GAAAAACCGA AGCGCGCAGC CAAAAAGGCT GAGAACATAA CCAAGGAAGA GGAATAA
|
|---|
| Protein sequence | MGRKVHPIGF RLGIIKDWSA KWHASDKGFA ECLTEDLKLR KAIAKKYVDA AISQVDIERQ
SNKVTVSVRT ARPGIVIGRG GQRVDEMRHF LEELIGKKVQ LNIVEISQAE LDAFLVARSV
AEQIERRVAY RRAMKQAIFR SMQAGAKGIK VCASGRLGGV EIARREVMHE GRVPLHTLRA
DIDYGCTRAH TALGDIGIKV WVYRGDILPE AKEQSEPEVT EMAAVMADAP AAAVAEAKVA
DTVAKPKRVT KKAEAEASAE EKPKRAAKKA ENITKEEE
|
|---|
| |