| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET0392 |
|---|
| Symbol | |
|---|
| ID | 3230272 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides ethenogenes 195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002936 |
|---|
| Strand | - |
|---|
| Start bp | 372979 |
|---|
| End bp | 373809 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637119958 |
|---|
| Product | AP endonuclease |
|---|
| Protein accession | YP_181137 |
|---|
| Protein GI | 57234803 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0648] Endonuclease IV |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000214103 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGTT TACTTTTCGG CACCGCCGGC ATTCCCTATT CCACCCCCAA ACACACCACC
CAGAACGGTA TCCACCGGGT GGCAGAGCTG GGGCTGGATG GCATGGAAAT AGAGTTTGTC
CGCGGGGTAT ATATGAAAGC CCCGGATACC AATCCGGTAC GCATACTTTC AGAGCTTCTC
CGCATAAAGC TGTCCGCCCA TGCCCCGTAC TACCTGAACT TTAATGCAGT GGAAGAAAAC
AAGGTTAAAA TGAGCCAGCA CCTGCTCTAC CAGTCCGCCA AAACGGCATC TCTGTGCGGG
GCGGGGTCAC TGGTATTTCA CCCAGGTTTT TACCTGACGG ATTCGCCTTC TGCCGCCTAC
GAAGCCATAC GGGATAATAT CCGCCCGGTG GCTGAACGTC TTCAGAAAGA GGGCTTTCCG
ATAAGCCTCC GCCCCGAAGT AAGCGGCAAA GTCACCCAGT TCGGAGACCT TAAGGAGACT
ATGGCACTTT GCAGCGAGAT ACCCGGCCTG CTGCCGACTA TAGATTTTTC CCATTACCAT
GCCCGCACCG GCAAATTCAA CTCTTATTCC GAGTTTAGTT TTATGTTAAC CACTATGGCT
GATTACCTGG GTGAAAGCGC CCTTAAAAAT ATGCATATAC ACATTTCCGG TATAGATTAC
TCACCCCGCG GCGAAAGACA GCACCTGAAC CTGGCTGAGT CAGATTTCAA TTATAAAGAA
CTGCTGCTTT GCCTTCGTGA CAAAGGCTGT GCCGGGCTGG TAATCTGCGA AAGCCCTAAT
CTGGAGGAAG ATGCCCTGCT TCTTAAAGAG ACCTACTTCT CTCTGGCCTG A
|
|---|
| Protein sequence | MAGLLFGTAG IPYSTPKHTT QNGIHRVAEL GLDGMEIEFV RGVYMKAPDT NPVRILSELL
RIKLSAHAPY YLNFNAVEEN KVKMSQHLLY QSAKTASLCG AGSLVFHPGF YLTDSPSAAY
EAIRDNIRPV AERLQKEGFP ISLRPEVSGK VTQFGDLKET MALCSEIPGL LPTIDFSHYH
ARTGKFNSYS EFSFMLTTMA DYLGESALKN MHIHISGIDY SPRGERQHLN LAESDFNYKE
LLLCLRDKGC AGLVICESPN LEEDALLLKE TYFSLA
|
|---|
| |