| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TC0676 |
|---|
| Symbol | |
|---|
| ID | 1246037 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlamydia muridarum Nigg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002620 |
|---|
| Strand | + |
|---|
| Start bp | 807745 |
|---|
| End bp | 809823 |
|---|
| Gene Length | 2079 bp |
|---|
| Protein Length | 692 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637061483 |
|---|
| Product | VacB/Rnb family exoribonuclease |
|---|
| Protein accession | NP_297050 |
|---|
| Protein GI | 15835291 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGGAAAAG CTAAAAACAA AAAGAAAGTT CTAAAAAATA AACAGCAGGT TCTGGTTCCT
GGTATTTTAT TCGTTCATCC TAAAAAAGGG TTCGGATTCG TTTCTCCAGA TCAACCAGAT
CTATACCCCT TTGATATTTT TGTCCCGGCC AGTGATTTAA AAGGCGCTTT AGATGGGGAT
CATGTTCTTG TTGCTCTCCC CTTCTCCCAG CGTGGAGGGG AAAAAAGAAA AGGAGTGATT
CATAAAGTTC TTTCTCGTGG GAAAACTGTC TTAGTAGGAA CTATCATCTC CCTTATCAGC
CCAACCTTGG CAATGGTTTG TGTTAATGCT ATCAGTCCCG AAGTTCCTTT AAAAGCAGAG
CTTCTTCCTA AAAGGACATA TAAGATCGGA GATCGTCTAT TACTCAAAAC TCCCGGATGG
AAAGAAAATT ACCCAAGTAA AGAGCCTCCT CCCCTAGCTA TGTTAGAATT CATGGGGAAT
ATCTCTAATG CAAAAACAGA TTTTCCTGTC ATTAAGGCTG AATTTTCCAT TACAGAAGAG
TTCCCTGAAG CTGTTGTTCA AGAAGCTAGT CAGTTCTTGC AAAAACACGT TACACAAGCT
TTACACTCCA GAAAAGATCT TCGCGATCTT TTATGCTTTA CCATAGACTC TGCTTCGGCT
AAAGACTTCG ATGATGCCGT TTCGCTAACT TATGATCATG AAGGGAATTA TATTTTAGGC
GTTCATATCG CTGATGTTTC TCACTATGTT ACTCCGAATT CGGCCCTAGA TCAAGAGGCT
GCTAAACGAT GCAATTCCAT CTATTTCCCA GGGAAAGTAA TTCCTATGCT TCCCTCAGCT
CTTTCTGATA ATTTGTGCAG TTTAAAACCC AATGTGGATC GTCTAGCGGT GTCCGTGTTT
ATGACTTTTT CCAAGGAAGG GTTCCTCTCA GATTACAGAA TTTTGCGTAG TGTTATCCGC
AGTAAATACC GAATGACTTA CGATGAAGTA GATGAAATTA TCGAGAAGAA ATTAGCTCAC
CCTATTTCTA AAACCATTTT AGAGATGGCT GAGCTGAGCC GTATTTTTTC CGATATCCGC
GAACAACGTG GCTGCACACG TCTCGTGCTT CCCTCTTTCA CAATGTCTCT TGATAATTTA
CAAGAACCTG TAGCCCTTGT CGAAAACAAA CAAACTGCTG CCCATAAACT CATTGAAGAA
TTTATGCTGA AAGCTAATGA GGTGATCGCT TATCACATTT CTCATCAGGG AATCACTATG
CCTTTCCGCA TACATGAGCC CCCGAATGAA GAGAATCTTC TTCTTTTTAG AGAAACTGCG
AAAGCTATGG GCTTCACTAT CACACAAACT CCTACACAAG AGCCCGATTA CCAATATTTG
TTACAAGAAA CCTCTGCTGG ACACCCTCTG GAGCCTATTC TTCATTCCCA GTTTGTGCGC
AGCATGAAGA CCGCTTCTTA TTCTACAGAA AACAAAGGTC ATTATGGTCT TTGTTTGGAT
TACTATACGC ATTTTACTAG CCCGATTCGT CGATATGTGG ATCTTATTGT TCACAGGCTT
CTTTTCCATC CGCTTTCTGT AGAAGAAGGA CATCTTGAAC AAATTGTTCG AGCCTGTTCA
TCTCAGGAAC GTGTTGCAGC AAAAGCTGAA GGAGCTTTTA TAAATATAAA AAAAGCTCGC
TTTTTGAAAA AATTCCTTGA TGAGCAGCCT GCAACACTTT ACAAAGCTTT CATCATTACA
GTATCTCCGG AAGGGCTCTC TTTCGTTCTT CCTGAATTGT GTCATGAAGG GTTCATCCCC
GCTGCTAAGC TTCCCAAGAA ATATGTCATA AAAACAAAGC TTGGATTGGA AGAGCTTCCT
GAACATTTGC TCCCAGGAAT ACCTATTTCG GTACAACTTG CTTCCGTTAC CTTACTTACA
CAGGCTATTG AATGGACTTT GATTGAATCT AAAGAGAGAA GCTCCTCGAA AAAAAAGAAA
GCAAAAGCAA AATCCAATGC AACGCAAGTG AAGAAAAAGA GTTCTTCTAA AAAGAAGAAA
GCGGTCTCCA AAGCTAAAAA AAATCGAGGA GGAAAATAG
|
|---|
| Protein sequence | MGKAKNKKKV LKNKQQVLVP GILFVHPKKG FGFVSPDQPD LYPFDIFVPA SDLKGALDGD
HVLVALPFSQ RGGEKRKGVI HKVLSRGKTV LVGTIISLIS PTLAMVCVNA ISPEVPLKAE
LLPKRTYKIG DRLLLKTPGW KENYPSKEPP PLAMLEFMGN ISNAKTDFPV IKAEFSITEE
FPEAVVQEAS QFLQKHVTQA LHSRKDLRDL LCFTIDSASA KDFDDAVSLT YDHEGNYILG
VHIADVSHYV TPNSALDQEA AKRCNSIYFP GKVIPMLPSA LSDNLCSLKP NVDRLAVSVF
MTFSKEGFLS DYRILRSVIR SKYRMTYDEV DEIIEKKLAH PISKTILEMA ELSRIFSDIR
EQRGCTRLVL PSFTMSLDNL QEPVALVENK QTAAHKLIEE FMLKANEVIA YHISHQGITM
PFRIHEPPNE ENLLLFRETA KAMGFTITQT PTQEPDYQYL LQETSAGHPL EPILHSQFVR
SMKTASYSTE NKGHYGLCLD YYTHFTSPIR RYVDLIVHRL LFHPLSVEEG HLEQIVRACS
SQERVAAKAE GAFINIKKAR FLKKFLDEQP ATLYKAFIIT VSPEGLSFVL PELCHEGFIP
AAKLPKKYVI KTKLGLEELP EHLLPGIPIS VQLASVTLLT QAIEWTLIES KERSSSKKKK
AKAKSNATQV KKKSSSKKKK AVSKAKKNRG GK
|
|---|
| |