Gene TC0423 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTC0423 
SymbolligA 
ID1245776 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlamydia muridarum Nigg 
KingdomBacteria 
Replicon accessionNC_002620 
Strand
Start bp484203 
End bp486185 
Gene Length1983 bp 
Protein Length660 aa 
Translation table11 
GC content42% 
IMG OID637061223 
ProductNAD-dependent DNA ligase LigA 
Protein accessionNP_296800 
Protein GI15835041 
COG category[L] Replication, recombination and repair 
COG ID[COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) 
TIGRFAM ID[TIGR00575] DNA ligase, NAD-dependent 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAGCTT TGTCTCAAGA CTATTATATT GCTTTATGTA CAGAGTTGAT AGAGCATGAT 
CGGCGTTATT ATGTGTTGGA TCGACCTACA ATTTCTGATT ACAGTTATGA TATGAAGATG
CGAGAGCTTC AAAAAATAGA AGCTCAACAT CCGGAGTGGA AGGTGCCTTG GTCGCCAACC
ATTTATTTGG GAGATCGTCC TTCTGGTCAG TTTCCTGTAG TTCCTCATTC ACATCCTATG
GTGTCTATAG CGAATGTGTA CTCTTTAGAG GAATTAGAGG AATTTTTTTC CCGGACAGAA
AAGCTGCTTG GTTATTTCCC TACATATTCT TTAGAACTCA AAATTGATGG AATCGCTGTT
GCGATTCGTT ATGAAAACAG GACGTTTGCT CAGGCTTTGA GCAGAGGAAA TGGAGTTAAA
GGGGAAGATA TTACAGCTAA CGTAAGTACG ATACGTTCTT TGCCTATGAC TCTTCCTCAA
GATGCACCAG AAGAGGTAGA GGTTCGAGGA GAGGTATTTC TTTCATACCA GGCTTTTGAG
AAGCTCAATA TTTGTCAGCG AGAACAAGGG AAATTAGAAT TTGCGAATCC TCGCAATGCT
GCTGGAGGGA CTCTTAAGCT GTTGTCTTCT AGGGAGGCAG CTAAAAGGAA TCTGGACTTA
TCCATTTATG GACTCATCAC GAATCGTGAA GAGCATTCTC ACTTTGAAAA TCTTGGTCTA
TGTGCTCATT GGGGATTTCC TATCGCAGGC ATGCCTAAAC AGTGCCGCAC GAAAGAAGAG
GTTATAGAAC GCATACGAGA AGTTGAAGGA ATGCGATCGC GGCTTCCCAT GGCCATAGAT
GGGGTGGTCG TTAAGGTCGA TAGTGTTGCC GAGCAGCATC GTTTAGGATT GACTAGCAAG
CATTATCGTT GGGCGATAGC CTACAAATAT GCTCCGGAAA GAGCAGAAAC CATTTTACAA
GATATTACCG TGCAGGTTGG TAAAACAGGG ATTTTAACTC CAGTTGCCGA ACTAACTCCC
GTTTTGCTGT CTGGGAGCCG AGTGTCTAGA GCATCTCTAT ACAACGAGGA TGAAATAGAG
AAGAAGGACA TTCGCATAGG AGATTCTGTT TACGTAGAAA AAGGTGGAGA AATTATCCCT
AAAATCGTTG GGATTAATTT AGCTAAGCGT TCTCCTGATA GTAAACCTTG GAAAATGCCA
AGCCTATGTC CTATGTGCCA TAATCCAGTC ATTAAAGAAA GAGTGTCTGT TCGTTGTACA
AACCCTCTTT GCCTTGGGGG AATGTTAGAA AAGATTTGTT TCTTTGCAAG TAAGGGAGCT
TTGAATATTG ATCATTTAGG CGAGAAGGTT ATAGCCAAAT TATTTGAAAT GGGGCTGATT
CGTTCTTGTT CCGATGTGTT TGCGCTTACA GAAAATGATT TGAAGCAGGT TCCAGGATTT
AAGGACCGTT CTGTCCACAA TTTATTAGCG AGTATTGCAG GAGCCAAAGA AGTGACTTTG
GATCGATTTT TGACAGCGCT TTCCATACCT TTTGTAGGGA GTTCTGGGGC TATAGCTCTA
GCGGACCATT TTGGAACTTT AGATAAAGTA ATGAAAGCTT CCTTGGATGA ATTACTCTCT
ATAGAAGGTA TTGGTCAAAA AGTTGCAGCG TCTATCATAG ATTTCTTTTC TAAAACTGAG
AATGTAGAAG AGATTTGTCG TATGCAAGAG TTGGGGGTTC GCATTCTTCC TAAACAGGTA
GATAGATGGG CCCCTTTACA GGGTAAGATT TTTGTTCTTA CAGGGACTCT TCAGGAGATG
ACGCGATTAC AAGCCGAGGA GCGTATTCGT TCGTTAGGAG GAAAGATTAG TTCTTCTGTA
TCGAAGAATA CCTATGCTGT AGTTGTGGGA AGAGAAGCTG GGTCTAAGTT AAAAAAAGCT
CAGGAATTAG GGGTGCAGGT TCTAGAAGAA AGTGATTTGT TAAAAATTCT TAATCAAAAC
TAG
 
Protein sequence
MRALSQDYYI ALCTELIEHD RRYYVLDRPT ISDYSYDMKM RELQKIEAQH PEWKVPWSPT 
IYLGDRPSGQ FPVVPHSHPM VSIANVYSLE ELEEFFSRTE KLLGYFPTYS LELKIDGIAV
AIRYENRTFA QALSRGNGVK GEDITANVST IRSLPMTLPQ DAPEEVEVRG EVFLSYQAFE
KLNICQREQG KLEFANPRNA AGGTLKLLSS REAAKRNLDL SIYGLITNRE EHSHFENLGL
CAHWGFPIAG MPKQCRTKEE VIERIREVEG MRSRLPMAID GVVVKVDSVA EQHRLGLTSK
HYRWAIAYKY APERAETILQ DITVQVGKTG ILTPVAELTP VLLSGSRVSR ASLYNEDEIE
KKDIRIGDSV YVEKGGEIIP KIVGINLAKR SPDSKPWKMP SLCPMCHNPV IKERVSVRCT
NPLCLGGMLE KICFFASKGA LNIDHLGEKV IAKLFEMGLI RSCSDVFALT ENDLKQVPGF
KDRSVHNLLA SIAGAKEVTL DRFLTALSIP FVGSSGAIAL ADHFGTLDKV MKASLDELLS
IEGIGQKVAA SIIDFFSKTE NVEEICRMQE LGVRILPKQV DRWAPLQGKI FVLTGTLQEM
TRLQAEERIR SLGGKISSSV SKNTYAVVVG REAGSKLKKA QELGVQVLEE SDLLKILNQN