Gene TC0045 details

Gene Information

• Locus tag: TC0045
• Symbol: sctC
• ID: 1245570
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlamydia muridarum Nigg
• Kingdom: Bacteria
• Replicon accession: NC_002620
• Strand: +
• Start bp: 51020
• End bp: 53038
• Gene Length: 2019 bp
• Protein Length: 672 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 637060834
• Product: type III secretion protein SctC
• Protein accession: NP_296429
• Protein GI: 15834670
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1450] Type II secretory pathway, component PulD
• TIGRFAM ID: [TIGR02517] general secretion pathway protein D

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAACAAGA ATTCTCTTAC TTGTCAGGAT TTGAAAGAAG TTGGCTATAC CGTCAATTTT 
GAAGACATTT CTATTTTGGA ATTGCTGCAG TTTGTAAGTA AGATTTCCGG AACAAATTTC 
GTTTTTGATA GCAATGACTT GCAATTCAAT GTAACGATAG TTTCTCACGA TCCTACTTCG 
GTGGATGATT TAGCAACGAT TCTATTGCAA GTTTTGAAGA TGCATGACTT GAAAGTCATG 
GAGCAGGGGA ATAACGTATT AATTTATCGC AATCCGAAGC TTTCACAACT GTCAACAGTA 
GTGACTGATG GCTCTGCCAA AGATACTAGT GAAGCAGTAG TGGTTACACG AGTATTTCGT 
TTGTATAGCG TAAGTCCTTC TGCTGCGGTA GAAATTATTC AGCCGTTACT TTCCCATGAT 
GCGATTATTA GTGCTTCCGA GTCCACTAGA CATATTATCG TTTCGGATAT AGCAGGAAAT 
ATCGAAAAAG TTCGAGAGTT GATACAGGCA TTAGATAGCC CTGGAGCGTC TATTGATATG 
TCTGAGTATG AAGTGCAGTT TGCTAATCCT GCTGCATTAG TTAGCTATTG TCAGGATGTC 
CTTGGAGCAA TGACGGAAGA AGAGGGCTTC CAAATTTTTA TTCAGCCAGG GACGAATAAA 
ATTTTTGTTA TTTCATCTCC AAGATTAACA ACGAAAGCGA TCCAATTATT ACAATCTTTA 
GATATCCCAG AAATGGCGCA TACATTGGAT GATGTGACGA GCCCTGCGTC TGCTTTGGGT 
AGCTCTGGAT CCGCTAATCC TAAGAGCATG CGCTTTTTCA TGTATAAATT GAAATATCAG 
GATGGATCAG CTATTGCTCA AGCGATCCAG GATATTGGGT ATAACCTTTA TGTGACAACG 
GCGATGGATG AAGATTTCAT CAACACGTTG AACACGATTC AATGGTTGCC TATTAACAAT 
TCTATCGTTG TGATCGGAAA TCAGGCTAAT GTGGATAAGG TTGTTAGTCT GTTGAACGGA 
TTAGATCTTC CTCCAAAACA AGTGTATATT GAAGTTCTCA TTTTAGAGAC GAGTTTAGAA 
AAATCTTGGG ACTTTGGGGT GCAATGGGCA GCTCTTGGAG ATGAACAAGG AAAAGTAGCT 
TATGCTTCTG GTTTGTTGAG TAACACAGGA GTGGTGGATC CTTTGCGTAA TCAGACTCCT 
CCCGTTGCTC CAAACCCAGG GAATATCTCG TTGCCAACTC CAGGTCAATT AGCTGGCATC 
AGTGATATGA TGTATGGATC TTCTGCATTT GGATTAGGAA TTATTGGGAA TGTTCTCAGT 
CATAATGGGA AGTCTTATCT AACGTTAGGA GGATTACTAA GTGCCCTAGA CCAAGATGGT 
GATACAACAG TGGTGCTTAA TCCAAGAATT ATGGCGCAAG ATACGCAGCA AGCGTCCTTC 
TTTGTAGGCC AGACAATTCC TTTCCAAACA ACGAGTACGG TTATCCAGGA AACTGGCTCT 
GTTACACAAA ATATTGAATA CGAAGATATC GGAGTGAATC TGGTCGTAAC ATCAACTATT 
GCTCCTAATA ATGTCGTTAC TTTGCAGATC GAGCAAACGA TTTCTGAATT GCATTCAGCG 
CAAGGAGTTC TCACTCCTGT AACGGATAAA ACGTTTGCTG CTACAAGATT ACAAGTTCCT 
GACGGATGTT TCCTTGTTAT GAGTGGGCAT ATTCGAGATA AACTCACAAA AATTGTTTCT 
GGGGTGCCAT TACTCAGTTC TCTTCCTCTA ATCAAAGGAC TCTTTAGCCG AACAATCGAT 
CAGCGCCAAA AGCGCAATAT TATGATTTTC ATTAAGCCAA AAGTCATTAG TAGCTTTGAG 
GAAGGAACAG TCTTATCCAA CTCGGAAGGA TATCGTTATA ATTGGGAAAG TGAAAGAGGA 
TCTTTAGAAG TTGCTCCTCG TCATGCTCCC GAATGTCAGA ATGCTCCTAA GGTTCAGACA 
GAAAGTGATT TTAAAATGCT AGAAATAGAA GCAGAATAA 

 

Protein sequence

MNKNSLTCQD LKEVGYTVNF EDISILELLQ FVSKISGTNF VFDSNDLQFN VTIVSHDPTS 
VDDLATILLQ VLKMHDLKVM EQGNNVLIYR NPKLSQLSTV VTDGSAKDTS EAVVVTRVFR 
LYSVSPSAAV EIIQPLLSHD AIISASESTR HIIVSDIAGN IEKVRELIQA LDSPGASIDM 
SEYEVQFANP AALVSYCQDV LGAMTEEEGF QIFIQPGTNK IFVISSPRLT TKAIQLLQSL 
DIPEMAHTLD DVTSPASALG SSGSANPKSM RFFMYKLKYQ DGSAIAQAIQ DIGYNLYVTT 
AMDEDFINTL NTIQWLPINN SIVVIGNQAN VDKVVSLLNG LDLPPKQVYI EVLILETSLE 
KSWDFGVQWA ALGDEQGKVA YASGLLSNTG VVDPLRNQTP PVAPNPGNIS LPTPGQLAGI 
SDMMYGSSAF GLGIIGNVLS HNGKSYLTLG GLLSALDQDG DTTVVLNPRI MAQDTQQASF 
FVGQTIPFQT TSTVIQETGS VTQNIEYEDI GVNLVVTSTI APNNVVTLQI EQTISELHSA 
QGVLTPVTDK TFAATRLQVP DGCFLVMSGH IRDKLTKIVS GVPLLSSLPL IKGLFSRTID 
QRQKRNIMIF IKPKVISSFE EGTVLSNSEG YRYNWESERG SLEVAPRHAP ECQNAPKVQT 
ESDFKMLEIE AE