Gene TC0012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTC0012 
SymboltopA 
ID1245536 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlamydia muridarum Nigg 
KingdomBacteria 
Replicon accessionNC_002620 
Strand
Start bp17361 
End bp19958 
Gene Length2598 bp 
Protein Length865 aa 
Translation table11 
GC content40% 
IMG OID637060801 
ProductDNA topoisomerase I/SWI domain fusion protein 
Protein accessionNP_296396 
Protein GI15834637 
COG category[B] Chromatin structure and dynamics
[L] Replication, recombination and repair 
COG ID[COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I
[COG5531] SWIB-domain-containing proteins implicated in chromatin remodeling 
TIGRFAM ID[TIGR01051] DNA topoisomerase I, bacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.25431 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAT CCTTAATCAT CGTTGAGTCC CCAGCTAAGA TCAAAACCTT ACGAAAATTG 
TTAGGAGAAG GGTTTATTTT CGACTCTTCT TTGGGTCATA TTGTAGATCT TCCAGCAAAA
GGGTTTGGTA TTGATATCGA AAAAGGATTT ATTCCGGACT ACCAAATTCT AGAGGGGAAG
GAAGAGGTTA TTCGGAAAAT TTGTGCTGAA GCCAAGAAAT GCGACGTTGT TTATCTTGCT
CCCGATCCAG ACCGAGAGGG GGAGGCTATA GCATGGCATA TTGCCAATCA GTTGCCTAAG
AATACCAAAA TTCAGAGAAT TTCTTTTAAT GCGATCACTA AAGGGGCTGT TACAGAAGCG
TTGAAGCATC CCCGAGAAAT TGATATGGCG TTGGTTAATG CTCAGCAGGC GAGACGTTTT
TTAGATCGCA TAGTGGGGTA TAAAATTTCT CCAATCTTGG GTCGCAAGTT GCAGCGATGG
TCGGGAGTAT CTGCAGGAAG AGTGCAGTCT GTAGCTTTGA AATTAGTTGT AGATCGAGAA
TACGCCATAG AACAATTTGT TCCTGTAGAG TTTTGGAATA TTCGCGTTAA TCTCCAAGAT
CCTAAAAGTC AGAAAACGTT TTGGGCGCAT TTACATTCTG TAAATGGAAA AAAATGGGAA
AAAGAAATTC CAGAGGGGAA GTCTTCTGAA GACGTAGTCT TAATTGATTC TAAAGAAAAA
GCGGATGATT TAGTTTCCCT ATTAGAATCA GCAACTTATT GCGTAGATCG CGTTGAATCT
AAAGAGAAAA AGCGCAACGC ATATCCTCCA TTTATTACTT CTACGTTACA GCAGGAAGCC
AGTCGACATT ATCGTTTTTC TTCCTCTAGA ACGATGAATA TCGCTCAAAC TTTATACGAA
GGGGTGGATT TAGATAGTCA AGGCGCTGTG GGATTAATTA CTTACATGAG AACCGATTCC
GTTCGGACAG ATCCTGAAGC TATCAAACAG GTGCGTAAGT ATATAGAGAA CCATTTTGGA
AAAGAATATG TGCCTTCTTC TCCAAATATG TATGCCACGA AGAAAATGGC TCAGGATGCT
CATGAGGCTA TACGTCCTAC AGATGTTTCT CTTTCTCCCG AATCCATACG TACAAAGTTA
ACAGAAGATC AGTACAAACT TTACTCTTTG ATATGGAAGC GTTTTGTAGC TTCACAAATG
ATTGCGGCCA TCTATGATAC TCTTGCCATT CAAATAGCGA CAAATAAAGG CATAGATCTC
CGGGCTACAG GTTCTTGCTT AAAGTTTAAG GGGTTTTTAG CTGTCTATGA AGAGAAAAGA
GATGAAGAAG GAGATGAGGA TGAGAATATT CAGCTTCCTA AGCTCCATGA GCGTGATGAG
CTAAAAAAAG AGGAAATAGA AGCTGAACAA TCGCATACTA AACCTCTACC GCGTTTCACA
GAGGCCTCTT TAGTTAAGGA ATTAGAAAAA TCTGGCATAG GAAGACCTTC TACTTATGCT
ACGATTATGA ATAAAATTCA GAGTCGGGAA TATACATTAA AAGAAGGCCA ACGATTACGT
CCTACCGAGC TTGGAAAGGT AGTTTGTCAA TTTTTAGAGA CGAATTTCCC TCGGATTATG
GACATTGGTT TTACGGCTAA AATGGAAGAT GAGCTAGAGC TTATCGCTGA TAATAAAAAG
CCTTGGAAAC AGCTGTTACA AGAATTTTGT GAATTATTCC TTCCTTTTGT AGTGACGGCT
GAAAAAGAAG CTTTTATTCC TCGTATTGTC ACAGAAATGG ACTGTCCAAG ATGTCATAAA
GGGAAACTAG TAAAAATTTG GTCTAAAAAT CGATACTTCT TTGGTTGTTC GGAATACCCT
ACCTGTGATT ACAAAACTTC GGAAGAAGAG CTCACTTTCG ATAAAAGCGA GTATGCAGAC
GATACTCCTT GGGATGCTCC TTGCGCTCTT TGTGGGGGGC AAATGAAAGT GCGACATGGG
AAGTTTGGAA GCTTTCTCGG GTGCGAGAAT TACCCACAAT GTCATTATAT TGTGAATCTT
TTTAAAAAAG GAGAAGCTGG CTCAGAGCCT GAAGAGATCG TATCATGTCC TGCAGAAGGC
TGTACTGGTC ATCTCGTTAA AAGAAGATCG CGGTTTAATA AAATGTTTTA TTCCTGTTCA
GAGTATCCTG CGTGCAGCGT TATTGGGAAC TCTGTAGATG CAGTCATTGA AAAATATACA
GGAACTCCTA AAACTCCTTA TGAGAAGAAG ATAAAAGCTA AAAAAGCAAC AGCTTCTAAA
AAGGGAAAAG CAACAAAAGG AAAGGCTTCT ACTACGAAAA CAAAGAAAAA ATCTACTGTA
ACGACGAAAA ACAGAAAGAC TGCAACCTAT ACACCTTCTT CTGCTTTAGC TGCTGTTATT
GGTCCTGACC CAATAGATGG TTTCCCCGAA GCTACGAAAA AAATCTGGGC GTATATCAAA
GAGCAGGGAT TGCAATCGCC GAATAACAAA AGAGTCATTG TCCCTGATAG CAAAATGAAG
CATGTAATCG GTGATGATCC GATTGATATG TTCGCACTAT CTAAAAAAAT ACAAGCGCAT
TTAACGAAGC AAGAGTAA
 
Protein sequence
MKKSLIIVES PAKIKTLRKL LGEGFIFDSS LGHIVDLPAK GFGIDIEKGF IPDYQILEGK 
EEVIRKICAE AKKCDVVYLA PDPDREGEAI AWHIANQLPK NTKIQRISFN AITKGAVTEA
LKHPREIDMA LVNAQQARRF LDRIVGYKIS PILGRKLQRW SGVSAGRVQS VALKLVVDRE
YAIEQFVPVE FWNIRVNLQD PKSQKTFWAH LHSVNGKKWE KEIPEGKSSE DVVLIDSKEK
ADDLVSLLES ATYCVDRVES KEKKRNAYPP FITSTLQQEA SRHYRFSSSR TMNIAQTLYE
GVDLDSQGAV GLITYMRTDS VRTDPEAIKQ VRKYIENHFG KEYVPSSPNM YATKKMAQDA
HEAIRPTDVS LSPESIRTKL TEDQYKLYSL IWKRFVASQM IAAIYDTLAI QIATNKGIDL
RATGSCLKFK GFLAVYEEKR DEEGDEDENI QLPKLHERDE LKKEEIEAEQ SHTKPLPRFT
EASLVKELEK SGIGRPSTYA TIMNKIQSRE YTLKEGQRLR PTELGKVVCQ FLETNFPRIM
DIGFTAKMED ELELIADNKK PWKQLLQEFC ELFLPFVVTA EKEAFIPRIV TEMDCPRCHK
GKLVKIWSKN RYFFGCSEYP TCDYKTSEEE LTFDKSEYAD DTPWDAPCAL CGGQMKVRHG
KFGSFLGCEN YPQCHYIVNL FKKGEAGSEP EEIVSCPAEG CTGHLVKRRS RFNKMFYSCS
EYPACSVIGN SVDAVIEKYT GTPKTPYEKK IKAKKATASK KGKATKGKAS TTKTKKKSTV
TTKNRKTATY TPSSALAAVI GPDPIDGFPE ATKKIWAYIK EQGLQSPNNK RVIVPDSKMK
HVIGDDPIDM FALSKKIQAH LTKQE