Gene Ssol_1889 details

Gene Information

• Locus tag: Ssol_1889
• ID: 0
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sulfolobus solfataricus 98/2
• Kingdom: Archaea
• Replicon accession: CP001800
• Strand: +
• Start bp: 1678023
• End bp: 1680029
• Gene Length: 2007 bp
• Protein Length: 668 aa
• Translation table: 11
• GC content: 32%
• Product: DNA topoisomerase I
• Protein accession: ACX92101
• Protein GI: 261602498

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.806156
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTTAT GTAATGTAAA CAACTATTAC CTTATAATTG CAGAAAAATC AAAAGCTGCT 
AAAAAAATCG CAGAAGCTCT TTCAGAGAAG CCTATTTTGT GTAGAAAATA TAACGTTAGT 
TATTGGATAA TAAAAGATCA CAATAGCAGC AAATATGTTA TAGTTCCTGC AGCAGGACAT 
CTTTTTGGGT TAAAAGGCGA GAGCGGTTTT CCGGTATATG ATGCGGACTG GAAACCTCTA 
TGGGAAATTG ATAAGAATAG TTACTATACA AAAAGGTACT ATCAACTTAT CTCATCTCTT 
AGCAAGTATG CTTTAGGTTT TATCAATGCT TGTGATTACG ATATAGAAGG TTCTGTAATC 
GGCTATTTAA TAATCAAAAA TCTAGGCGAT ATTAAGAAGG CTAAACGAAT GAAATTTTCA 
GCACTGACTA AAAGTGATAT ATTATCTGCA TTTAGAAACA TTTCTGCATT AGATTACGAT 
ATGATAAACG CTGGAATAGC CAGACATAAA ATTGACTGGC TATGGGGAAT TAACGTTAGT 
AGGGCTCTTA TGATCTCTCT ACAAGATTTC GCAAAGAAAA GAGTGATATT AAGTGCGGGT 
AGGGTTCAAA GTCCAACTCT AGTTCAAGTT GTCAACTCGG AAATTGAAAG AAACCTATTT 
ATTCCCCTAC CTAAATTTAC CGTTTCAATT ATCGTGAAAA TTAAAGATTA TTCATTAAAC 
ATTAAGGTAA ATAAGGAATT CGAAAAAATT ACCGAAGCAA AGGAATTCTT AAACAAACTA 
ATAAATAAAA CAGTAAAAGT TGTTGAAGTT GAAAATAGGG TTAGGTTATT AGAAAGACCC 
TCTCCATTTA ATCTTACTGA TCTCCAAATA GAAGCTGGCA GAATATATGG TATATCCCCA 
TATAACGTAG AACGTATAGC AGAAGATCTT TATTTGGACG GTCTAATAAG TTACCCAAGA 
ACTAACAGTC AAAAAATTCC ATCAACTATC AGCATTTATA ATATAATCAA AGGCTTAGAG 
AACAGTTCGT ATAGGAAACT AGTTGATTTA GTAAGGAAAA TCACTGGGGG GAAATATGTA 
GTTAAGCAGG GCATTAAGGA TGATCCTGCA CACCCCGCAA TCCACCCTAC TGGTGAAGCT 
CCCAAAAACT TACCTAATAG CAAATTCAAG ATATATGACT TAATAGCAAG AAGATTTTTG 
GGGTCAGTAT CTGCTGATGC TAAATTATCT AATACTATTT ACACCTTGAA AGTTAGTGAT 
TTCCCATTAG AGTTTACGGT CTCATATACA AAAATACTAG AAAGAAATTG GCTAGATATA 
TATCACTTTC ATAATGTAAA AGAAGATAAA CCAATATTTC TCTCAAAAGG TGATGAGGGT 
AAAATAGTAG ATGGAAAAGT AAATATTAGT TTAAGCAAGC CCACTTCTAG GTATACAAAG 
GTTTCATTAC TCAAATGGAT GGAGTCTTCT AATTTGGGTA CAGAAGCCAC TAGAGGAAGA 
ATAATCGAGA TCTTAGTAAA GAGAAAATAT TTAACTAACA ATGGGCGATA CATAATTCCT 
ACAAAATTGG GATTCTATAT TGCTGAAATA TTAAACAAAT TTTTCCCAGA TATAGTTGAT 
GTTAGGATGA CTGCAGATAT GGAAAGTAAA TTAGAAATGA TAAAGACTGG CAAAGTTTTG 
GAAAGCAAAG TGATTAAAGA AAACATAGAA AAATTAAATA AATTCATAGA GGAATACAAG 
GTAAATAAGG ATAAAGTAGG AGAGTCATTA GCTAAAGCGT TAGGTCTTAT AAAAATTGTT 
AAGTGTAAGT ATTGTGATCT GGAGCAGTAT AAGGATGGAT TATGTAAATA TCACTATGAA 
GCCAAAGTAA GGCTTTTAGA TGCTGTGGAA ATTTGGAAAG AAAGGACAAA ATATGATCAT 
AAAAAGATTT TAAAGAGAAT TAGTAGTAGT AAATCAACGG GTAAATACGT AAAAGATATA 
GTAACTTATA TGCTAAGCAG TGAATGA 

 

Protein sequence

MNLCNVNNYY LIIAEKSKAA KKIAEALSEK PILCRKYNVS YWIIKDHNSS KYVIVPAAGH 
LFGLKGESGF PVYDADWKPL WEIDKNSYYT KRYYQLISSL SKYALGFINA CDYDIEGSVI 
GYLIIKNLGD IKKAKRMKFS ALTKSDILSA FRNISALDYD MINAGIARHK IDWLWGINVS 
RALMISLQDF AKKRVILSAG RVQSPTLVQV VNSEIERNLF IPLPKFTVSI IVKIKDYSLN 
IKVNKEFEKI TEAKEFLNKL INKTVKVVEV ENRVRLLERP SPFNLTDLQI EAGRIYGISP 
YNVERIAEDL YLDGLISYPR TNSQKIPSTI SIYNIIKGLE NSSYRKLVDL VRKITGGKYV 
VKQGIKDDPA HPAIHPTGEA PKNLPNSKFK IYDLIARRFL GSVSADAKLS NTIYTLKVSD 
FPLEFTVSYT KILERNWLDI YHFHNVKEDK PIFLSKGDEG KIVDGKVNIS LSKPTSRYTK 
VSLLKWMESS NLGTEATRGR IIEILVKRKY LTNNGRYIIP TKLGFYIAEI LNKFFPDIVD 
VRMTADMESK LEMIKTGKVL ESKVIKENIE KLNKFIEEYK VNKDKVGESL AKALGLIKIV 
KCKYCDLEQY KDGLCKYHYE AKVRLLDAVE IWKERTKYDH KKILKRISSS KSTGKYVKDI 
VTYMLSSE