| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcDH1_2783 |
|---|
| Symbol | |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli DH1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001637 |
|---|
| Strand | - |
|---|
| Start bp | 2981474 |
|---|
| End bp | 2982601 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | 23S rRNA (uracil-5-)-methyltransferase RumB |
|---|
| Protein accession | ACX40416 |
|---|
| Protein GI | 260449994 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.720743 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTGCG CACTTTACGA CGCGGGTCGC TGTCGTTCCT GTCAGTGGAT AATGCAGCCG
ATTCCAGAGC AACTCTCCGC TAAAACCGCC GATCTTAAAA ATCTGCTCGC CGACTTTCCG
GTTGAGGAAT GGTGCGCGCC GGTGTCAGGC CCGGAACAAG GGTTTCGTAA TAAAGCCAAA
ATGGTGGTGA GTGGTAGCGT TGAAAAACCA CTGCTCGGTA TGCTGCATCG CGATGGCACA
CCAGAAGACC TTTGTGACTG CCCGCTTTAT CCTGCCTCAT TTGCGCCCGT TTTTGCGGCG
CTAAAACCGT TTATCGCCCG AGCGGGGTTA ACGCCCTACA ACGTGGCGCG TAAGCGTGGC
GAACTGAAAT ACATTCTGCT GACTGAAAGC CAGAGTGATG GAGGCATGAT GCTGCGCTTT
GTACTGCGTT CTGATACCAA GCTGGCGCAA CTGCGTAAGG CGCTGCCGTG GTTACACGAA
CAACTACCGC AGCTGAAAGT TATTACCGTC AATATTCAGC CGGTACATAT GGCGATTATG
GAAGGGGAGA CGGAGATCTA CCTGACCGAA CAACAGGCAC TGGCGGAGCG TTTTAATGAC
GTACCGCTGT GGATCCGTCC GCAAAGTTTC TTCCAGACTA ATCCGGCGGT CGCCAGCCAG
TTGTACGCCA CCGCGCGCGA CTGGGTACGA CAGCTGCCGG TTAAACATAT GTGGGATCTG
TTCTGCGGTG TGGGGGGCTT TGGTTTACAC TGCGCGACGC CTGACATGCA GTTAACCGGG
ATCGAAATTG CATCAGAGGC CATTGCCTGT GCAAAGCAGT CAGCCGCTGA ACTGGGCTTA
ACGCGTTTGC AATTTCAGGC GCTGGACTCC ACTCAGTTTG CCACCGCTCA GGGGGATGTG
CCGGAGCTGG TGCTGGTTAA CCCGCCGCGC CGCGGCATTG GTAAACCGCT GTGTGATTAT
CTCTCAACGA TGGCACCGCG TTTTATCATC TACTCCAGCT GTAACGCCCA AACTATGGCG
AAAGATATCC GCGAACTGCC TGGGTTTCGT ATTGAACGGG TGCAGCTTTT CGATATGTTC
CCGCATACCG CGCACTATGA AGTGCTGACG CTGCTGGTGA AGCAATAA
|
|---|
| Protein sequence | MQCALYDAGR CRSCQWIMQP IPEQLSAKTA DLKNLLADFP VEEWCAPVSG PEQGFRNKAK
MVVSGSVEKP LLGMLHRDGT PEDLCDCPLY PASFAPVFAA LKPFIARAGL TPYNVARKRG
ELKYILLTES QSDGGMMLRF VLRSDTKLAQ LRKALPWLHE QLPQLKVITV NIQPVHMAIM
EGETEIYLTE QQALAERFND VPLWIRPQSF FQTNPAVASQ LYATARDWVR QLPVKHMWDL
FCGVGGFGLH CATPDMQLTG IEIASEAIAC AKQSAAELGL TRLQFQALDS TQFATAQGDV
PELVLVNPPR RGIGKPLCDY LSTMAPRFII YSSCNAQTMA KDIRELPGFR IERVQLFDMF
PHTAHYEVLT LLVKQ
|
|---|
| |