| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcDH1_1657 |
|---|
| Symbol | |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli DH1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001637 |
|---|
| Strand | - |
|---|
| Start bp | 1803397 |
|---|
| End bp | 1806516 |
|---|
| Gene Length | 3120 bp |
|---|
| Protein Length | 1039 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | |
|---|
| Product | outer membrane autotransporter barrel domain protein |
|---|
| Protein accession | ACX39321 |
|---|
| Protein GI | 260448899 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.656845 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAC ATCTGAATAC CTGCTACAGG CTGGTATGGA ATCACATGAC GGGCGCTTTC
GTGGTTGCCT CCGAACTGGC CCGCGCACGG GGTAAACGTG GCGGTGTGGC GGTTGCACTG
TCTCTTGCCG CAGTCACGTC ACTCCCGGTG CTGGCTGCTG ACATCGTTGT GCACCCGGGA
GAAACCGTGA ACGGCGGAAC ACTGGCAAAT CATGACAACC AGATTGTCTT CGGTACGACC
AACGGAATGA CCATCAGTAC CGGGCTGGAG TATGGGCCGG ATAACGAGGC CAATACCGGC
GGGCAATGGG TACAGGATGG CGGAACAGCC AACAAAACGA CTGTCACCAG TGGTGGTCTT
CAGAGAGTGA ACCCCGGTGG AAGTGTCTCA GACACGGTTA TCAGTGCCGG AGGCGGACAG
AGCCTTCAGG GACGGGCTGT GAACACCACG CTGAATGGTG GCGAACAGTG GATGCATGAG
GGGGCGATAG CCACAGGAAC CGTCATTAAT GATAAGGGCT GGCAGGTCGT CAAGCCCGGT
ACAGTGGCAA CGGATACCGT TGTTAATACC GGGGCGGAAG GGGGACCGGA TGCAGAAAAC
GGTGATACCG GGCAGTTTGT TCGCGGGGAT GCCGTACGCA CAACCATCAA TAAAAACGGT
CGCCAGATTG TGAGAGCTGA AGGAACGGCA AATACCACTG TGGTTTATGC CGGCGGCGAC
CAGACTGTAC ATGGTCACGC ACTGGATACC ACGCTGAATG GGGGATACCA GTATGTGCAC
AACGGCGGTA CAGCGTCTGA CACTGTTGTG AACAGTGACG GCTGGCAGAT TGTCAAAAAC
GGGGGTGTGG CCGGGAATAC CACCGTTAAT CAGAAGGGCA GACTGCAGGT GGACGCCGGT
GGTACAGCCA CGAATGTCAC CCTGAAGCAG GGCGGCGCAC TGGTTACCAG TACGGCTGCA
ACCGTTACCG GCATAAACCG CCTGGGAGCA TTCTCTGTTG TGGAGGGTAA AGCTGATAAT
GTCGTACTGG AAAATGGCGG ACGCCTGGAT GTGCTGACCG GACACACAGC CACTAATACC
CGCGTGGATG ATGGCGGAAC GCTGGATGTC CGCAACGGTG GCACCGCCAC CACCGTATCC
ATGGGAAATG GCGGTGTACT GCTGGCCGAT TCCGGTGCCG CTGTCAGTGG TACCCGGAGC
GACGGAAAGG CATTCAGTAT CGGAGGCGGT CAGGCGGATG CCCTGATGCT GGAAAAAGGC
AGTTCATTCA CGCTGAACGC CGGTGATACG GCCACGGATA CCACGGTAAA TGGCGGACTG
TTCACCGCCA GGGGCGGCAC ACTGGCGGGC ACCACCACGC TGAATAACGG CGCCATACTT
ACCCTTTCCG GGAAGACGGT GAACAACGAT ACCCTGACCA TCCGTGAAGG CGATGCACTC
CTGCAGGGAG GCTCTCTCAC CGGTAACGGC AGCGTGGAAA AATCAGGAAG TGGCACACTC
ACTGTCAGCA ACACCACACT CACCCAGAAA GCCGTCAACC TGAATGAAGG CACGCTGACG
CTGAACGACA GTACCGTCAC CACGGATGTC ATTGCTCAGC GCGGTACAGC CCTGAAGCTG
ACCGGCAGCA CTGTGCTGAA CGGTGCCATT GACCCCACGA ATGTCACTCT CGCCTCCGGT
GCCACCTGGA ATATCCCCGA TAACGCCACG GTGCAGTCGG TGGTGGATGA CCTCAGCCAT
GCCGGACAGA TTCATTTCAC CTCCACCCGC ACAGGGAAGT TCGTACCGGC AACCCTGAAA
GTGAAAAACC TGAACGGACA GAATGGCACC ATCAGCCTGC GTGTACGCCC GGATATGGCA
CAGAACAATG CTGACAGACT GGTCATTGAC GGCGGCAGGG CAACCGGAAA AACCATCCTG
AACCTGGTGA ACGCCGGCAA CAGTGCGTCG GGGCTGGCGA CCAGCGGTAA GGGTATTCAG
GTGGTGGAAG CCATTAACGG TGCCACCACG GAGGAAGGGG CCTTTGTCCA GGGGAACAGG
CTGCAGGCCG GTGCCTTTAA CTACTCCCTC AACCGGGACA GTGATGAGAG CTGGTATCTG
CGCAGTGAAA ATGCTTATCG TGCAGAAGTC CCCCTGTATG CCTCCATGCT GACACAGGCA
ATGGACTATG ACCGGATTGT GGCAGGCTCC CGCAGCCATC AGACCGGTGT AAATGGTGAA
AACAACAGCG TCCGTCTCAG CATTCAGGGC GGTCATCTCG GTCACGATAA CAATGGCGGT
ATTGCCCGTG GGGCCACGCC GGAAAGCAGC GGCAGCTATG GATTCGTCCG TCTGGAGGGT
GACCTGATGA GAACAGAGGT TGCCGGTATG TCTGTGACCG CGGGGGTATA TGGTGCTGCT
GGCCATTCTT CCGTTGATGT TAAGGATGAT GACGGCTCCC GTGCCGGCAC GGTCCGGGAT
GATGCCGGCA GCCTGGGCGG ATACCTGAAT CTGGTACACA CGTCCTCCGG CCTGTGGGCT
GACATTGTGG CACAGGGAAC CCGCCACAGC ATGAAAGCGT CATCGGACAA TAACGACTTC
CGCGCCCGGG GCTGGGGCTG GCTGGGCTCA CTGGAAACCG GTCTGCCCTT CAGTATCACT
GACAACCTGA TGCTGGAGCC ACAACTGCAG TATACCTGGC AGGGACTTTC CCTGGATGAC
GGTAAGGACA ACGCCGGTTA TGTGAAGTTC GGGCATGGCA GTGCACAACA TGTGCGTGCC
GGTTTCCGTC TGGGCAGCCA CAACGATATG ACCTTTGGCG AAGGCACCTC ATCCCGTGCC
CCCCTGCGTG ACAGTGCAAA ACACAGTGTG AGTGAATTAC CGGTGAACTG GTGGGTACAG
CCTTCTGTTA TCCGCACCTT CAGCTCCCGG GGAGATATGC GTGTGGGGAC TTCCACTGCA
GGCAGCGGGA TGACGTTCTC TCCCTCACAG AATGGCACAT CACTGGACCT GCAGGCCGGA
CTGGAAGCCC GTGTCCGGGA AAATATCACC CTGGGCGTTC AGGCCGGTTA TGCCCACAGC
GTCAGCGGCA GCAGCGCTGA AGGGTATAAC GGTCAGGCCA CACTGAATGT GACCTTCTGA
|
|---|
| Protein sequence | MKRHLNTCYR LVWNHMTGAF VVASELARAR GKRGGVAVAL SLAAVTSLPV LAADIVVHPG
ETVNGGTLAN HDNQIVFGTT NGMTISTGLE YGPDNEANTG GQWVQDGGTA NKTTVTSGGL
QRVNPGGSVS DTVISAGGGQ SLQGRAVNTT LNGGEQWMHE GAIATGTVIN DKGWQVVKPG
TVATDTVVNT GAEGGPDAEN GDTGQFVRGD AVRTTINKNG RQIVRAEGTA NTTVVYAGGD
QTVHGHALDT TLNGGYQYVH NGGTASDTVV NSDGWQIVKN GGVAGNTTVN QKGRLQVDAG
GTATNVTLKQ GGALVTSTAA TVTGINRLGA FSVVEGKADN VVLENGGRLD VLTGHTATNT
RVDDGGTLDV RNGGTATTVS MGNGGVLLAD SGAAVSGTRS DGKAFSIGGG QADALMLEKG
SSFTLNAGDT ATDTTVNGGL FTARGGTLAG TTTLNNGAIL TLSGKTVNND TLTIREGDAL
LQGGSLTGNG SVEKSGSGTL TVSNTTLTQK AVNLNEGTLT LNDSTVTTDV IAQRGTALKL
TGSTVLNGAI DPTNVTLASG ATWNIPDNAT VQSVVDDLSH AGQIHFTSTR TGKFVPATLK
VKNLNGQNGT ISLRVRPDMA QNNADRLVID GGRATGKTIL NLVNAGNSAS GLATSGKGIQ
VVEAINGATT EEGAFVQGNR LQAGAFNYSL NRDSDESWYL RSENAYRAEV PLYASMLTQA
MDYDRIVAGS RSHQTGVNGE NNSVRLSIQG GHLGHDNNGG IARGATPESS GSYGFVRLEG
DLMRTEVAGM SVTAGVYGAA GHSSVDVKDD DGSRAGTVRD DAGSLGGYLN LVHTSSGLWA
DIVAQGTRHS MKASSDNNDF RARGWGWLGS LETGLPFSIT DNLMLEPQLQ YTWQGLSLDD
GKDNAGYVKF GHGSAQHVRA GFRLGSHNDM TFGEGTSSRA PLRDSAKHSV SELPVNWWVQ
PSVIRTFSSR GDMRVGTSTA GSGMTFSPSQ NGTSLDLQAG LEARVRENIT LGVQAGYAHS
VSGSSAEGYN GQATLNVTF
|
|---|
| |