| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcDH1_1442 |
|---|
| Symbol | |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli DH1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001637 |
|---|
| Strand | - |
|---|
| Start bp | 1560812 |
|---|
| End bp | 1563484 |
|---|
| Gene Length | 2673 bp |
|---|
| Protein Length | 890 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | Hpt sensor signal transduction histidine kinase |
|---|
| Protein accession | ACX39112 |
|---|
| Protein GI | 260448690 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00000373023 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCAGA AAGAGACAAC GGCCACGACC CGCTTTTCAC TCCTACCGGG GAGCATTACC
CGCTTCTTTT TACTGTTGAT CATTGTGTTA CTGGTGACGA TGGGTGTAAT GGTACAAAGC
GCCGTTAACG CCTGGCTGAA AGATAAAAGT TACCAGATTG TCGACATTAC CCATGCTATC
CAAAAGCGCG TCGATAACTG GCGTTACGTG ACCTGGCAGA TCTACGACAA CATTGCCGCG
ACGACCTCCC CCTCCTCCGG CGAAGGTTTA CAAGAGACGC GCCTGAAACA GGATGTCTAC
TATCTGGAGA AACCACGCCG CAAAACGGAA GCGTTAATCT TTGGCTCTCA CGACAACTCA
ACGCTTGAGA TGACTCAGCG GATGTCCACT TATCTGGATA CATTGTGGGG CGCAGAAAAT
GTACCGTGGT CGATGTATTA CCTGAATGGT CAGGATAACA GTCTGGTGCT GATCTCAACC
CTACCCCTTA AAGATCTCAC CTCCGGATTT AAAGAATCGA CCGTCAGCGA CATTGTTGAT
TCACGTCGTG CAGAGATGTT GCAACAGGCC AACGCCCTCG ATGAACGCGA AAGCTTTTCT
AACATGCGCC GCCTGGCCTG GCAGAACGGT CATTACTTTA CATTGCGTAC TACCTTTAAC
CAGCCAGGAC ATCTGGCAAC GGTCGTGGCT TTTGATCTGC CGATTAATGA TTTGATCCCA
CCGGGTATGC CGCTGGACAG TTTCCGCCTT GAGCCAGACG CGACGGCAAC GGGAAACAAT
GATAATGAGA AAGAAGGGAC GGATAGCGTC AGTATCCACT TTAACAGTAC GAAGATTGAA
ATCTCCTCGG CACTCAACTC TACCGATATG CGCCTGGTCT GGCAGGTTCC TTATGGCACC
TTATTGCTGG ATACGTTGCA AAACATTCTG CTGCCACTGC TGCTGAACAT CGGTTTGCTG
GCGCTGGCGT TATTTGGCTA TACCACATTC CGCCATTTCT CCAGCCGCAG TACAGAAAAC
GTCCCCAGCA CGGCGGTCAA TAACGAATTG CGCATTTTAC GGGCAATCAA TGAAGAGATA
GTCTCACTGC TGCCGCTCGG CCTGCTGGTT CACGATCAGG AATCGAACCG CACTGTCATA
AGTAACAAAA TTGCCGATCA TTTGCTGCCG CATTTGAATC TGCAAAACAT CACCACCATG
GCGGAACAGC ATCAGGGGAT TATTCAGGCG ACGATCAATA ACGAGCTGTA TGAGATCCGC
ATGTTCCGCA GCCAGGTCGC GCCGCGCACA CAAATTTTCA TTATTCGCGA TCAGGATCGC
GAAGTGCTGG TAAACAAGAA ACTCAAGCAG GCGCAGCGTC TGTATGAGAA AAACCAGCAG
GGGCGGATGA TCTTTATGAA AAACATTGGC GATGCGCTGA AAGAACCCGC ACAGTCCCTG
GCGGAGAGCG CGGCTAAACT CAACGCCCCG GAAAGCAAAC AACTGGCGAA TCAGGCAGAT
GTGCTGGTGC GGCTGGTTGA TGAAATACAG TTAGCGAACA TGCTTGCGGA TGATAGCTGG
AAAAGTGAGA CGGTGCTGTT CTCCGTGCAG GATTTAATTG ATGAAGTTGT GCCTTCAGTG
TTGCCTGCCA TCAAGCGTAA AGGTCTGCAA CTGCTGATTA ACAATCATCT GAAAGCACAC
GATATGCGCC GCGGCGATCG CGATGCCTTA CGACGTATTT TGCTGCTACT GATGCAATAT
GCCGTGACCT CAACGCAATT GGGAAAAATC ACCCTTGAGG TTGATCAGGA TGAGTCCTCC
GAAGACCGCC TGACGTTCCG CATTCTGGAC ACGGGAGAAG GCGTAAGTAT TCATGAAATG
GATAATTTGC ACTTCCCGTT TATCAACCAG ACCCAAAACG ATCGCTATGG CAAGGCGGAC
CCGCTGGCAT TCTGGCTGAG CGATCAACTG GCACGTAAAC TGGGCGGTCA TTTAAACATC
AAAACGCGGG ATGGGCTTGG TACACGCTAC TCTGTGCATA TCAAAATGCT CGCAGCTGAC
CCGGAAGTTG AAGAGGAAGA AGAGCGTTTA CTGGATGATG TCTGCGTAAT GGTGGATGTT
ACTTCGGCAG AAATTCGGAA TATTGTCACT CGCCAGTTAG AAAATTGGGG TGCAACCTGT
ATCACACCCG ATGAAAGATT AATTAGTCAA GATTATGATA TCTTTTTAAC GGATAATCCG
TCTAATCTTA CTGCCTCTGG CTTGCTTTTA AGCGATGATG AGTCTGGCGT ACGGGAAATT
GGGCCTGGTC AATTGTGCGT CAACTTCAAT ATGAGCAACG CTATGCAGGA AGCGGTCTTA
CAATTAATTG AAGTGCAACT GGCGCAGGAA GAGGTGACAG AATCGCCTCT GGGCGGAGAT
GAAAATGCGC AACTCCATGC CAGCGGCTAT TATGCGCTCT TTGTAGACAC AGTACCGGAT
GATGTTAAGA GGCTGTATAC TGAAGCAGCA ACCAGTGACT TTGCTGCGTT AGCCCAAACG
GCTCATCGTC TTAAAGGCGT ATTTGCCATG CTAAATCTGG TACCCGGCAA GCAGTTATGT
GAAACGCTGG AACATCTGAT TCGTGAGAAG GATGTTCCAG GAATAGAAAA ATACATCAGC
GACATTGACA GTTATGTCAA GAGCTTGCTG TAG
|
|---|
| Protein sequence | MRQKETTATT RFSLLPGSIT RFFLLLIIVL LVTMGVMVQS AVNAWLKDKS YQIVDITHAI
QKRVDNWRYV TWQIYDNIAA TTSPSSGEGL QETRLKQDVY YLEKPRRKTE ALIFGSHDNS
TLEMTQRMST YLDTLWGAEN VPWSMYYLNG QDNSLVLIST LPLKDLTSGF KESTVSDIVD
SRRAEMLQQA NALDERESFS NMRRLAWQNG HYFTLRTTFN QPGHLATVVA FDLPINDLIP
PGMPLDSFRL EPDATATGNN DNEKEGTDSV SIHFNSTKIE ISSALNSTDM RLVWQVPYGT
LLLDTLQNIL LPLLLNIGLL ALALFGYTTF RHFSSRSTEN VPSTAVNNEL RILRAINEEI
VSLLPLGLLV HDQESNRTVI SNKIADHLLP HLNLQNITTM AEQHQGIIQA TINNELYEIR
MFRSQVAPRT QIFIIRDQDR EVLVNKKLKQ AQRLYEKNQQ GRMIFMKNIG DALKEPAQSL
AESAAKLNAP ESKQLANQAD VLVRLVDEIQ LANMLADDSW KSETVLFSVQ DLIDEVVPSV
LPAIKRKGLQ LLINNHLKAH DMRRGDRDAL RRILLLLMQY AVTSTQLGKI TLEVDQDESS
EDRLTFRILD TGEGVSIHEM DNLHFPFINQ TQNDRYGKAD PLAFWLSDQL ARKLGGHLNI
KTRDGLGTRY SVHIKMLAAD PEVEEEEERL LDDVCVMVDV TSAEIRNIVT RQLENWGATC
ITPDERLISQ DYDIFLTDNP SNLTASGLLL SDDESGVREI GPGQLCVNFN MSNAMQEAVL
QLIEVQLAQE EVTESPLGGD ENAQLHASGY YALFVDTVPD DVKRLYTEAA TSDFAALAQT
AHRLKGVFAM LNLVPGKQLC ETLEHLIREK DVPGIEKYIS DIDSYVKSLL
|
|---|
| |