| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcDH1_0561 |
|---|
| Symbol | |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli DH1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001637 |
|---|
| Strand | - |
|---|
| Start bp | 592434 |
|---|
| End bp | 594950 |
|---|
| Gene Length | 2517 bp |
|---|
| Protein Length | 838 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | |
|---|
| Product | fimbrial biogenesis outer membrane usher protein |
|---|
| Protein accession | ACX38249 |
|---|
| Protein GI | 260447827 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCACAAC GACACCACCA GGGACATAAA CGCACACCGA AACAGTTGGC GCTCATCATC
AAACGTTGTT TGCCGATGGT GCTCACTGGC AGCGGCATGC TTTGCACTAC CGCTAACGCC
GAAGAGTATT ATTTCGACCC CATTATGCTG GAAACCACAA AAAGTGGTAT GCAAACAACC
GATCTGTCGC GTTTTTCAAA AAAATATGCA CAACTACCAG GAACTTATCA GGTTGATATC
TGGCTGAATA AAAAGAAGGT TTCACAGAAA AAAATTACAT TTACCGCCAA TGCAGAGCAA
CTTCTGCAGC CACAGTTTAC GGTAGAACAA CTACGTGAGC TGGGTATTAA GGTGGATGAA
ATCCCGGCGC TGGCTGAAAA AGATGACGAT AGCGTGATCA ACTCGCTTGA ACAAATCATT
CCCGGTACAG CTGCTGAATT TGATTTCAAT CATCAGCAAC TTAATTTGAG CATTCCCCAA
ATTGCACTGT ACCGTGATGC AAGAGGTTAC GTCTCCCCTT CTCGTTGGGA CGATGGTATA
CCAACGCTGT TTACCAACTA CTCGTTTACA GGTTCTGATA ACCGTTACCG CCAGGGCAAT
CGTAGCCAAC GACAGTACCT GAATATGCAA AATGGTGCTA ATTTTGGCCC CTGGCGATTA
CGCAACTATT CCACATGGAC ACGCAACGAT CAGACATCAA GCTGGAATAC CATCAGTAGT
TATTTACAAC GTGATATCAA GGCGTTGAAG TCTCAGTTGC TTCTGGGAGA AAGCGCCACC
AGCGGCAGTA TTTTTTCCAG CTACACCTTT ACTGGCGTGC AACTCGCTTC CGACGATAAT
ATGTTGCCAA ACAGCCAGCG CGGATTTGCC CCAACGGTAC GCGGTATCGC AAACAGTAGT
GCAATCGTGA CTATCAGGCA AAATGGTTAT GTGATCTATC AAAGCAACGT GTCAGCGGGT
GCCTTTGAAA TTAACGATCT CTACCCCTCT TCCAACAGCG GCGATTTAGA AGTCACGATT
GAAGAAAGTG ACGGTACACA ACGTCGCTTT ATCCAGCCTT ATTCTTCATT ACCCATGATG
CAGCGACCTG GGCATCTAAA GTATAGCGCG ACCGCTGGAC GCTATCGCGC TGATGCAAAC
AGTGATAGCA AGGAACCCGA ATTTGCTGAA GCCACGGCAA TATATGGTTT GAATAATACT
TTTACGCTGT ATGGCGGCCT GCTCGGTTCT GAAGATTATT ATGCGCTGGG GATCGGTATC
GGCGGCACAC TTGGCGCACT GGGCGCGTTG TCGATGGATA TCAACAGAGC TGACACCCAA
TTCGATAACC AGCACTCTTT TCATGGCTAT CAATGGCGTA CGCAGTACAT CAAAGATATC
CCGGAAACCA ACACCAATAT CGCTGTCAGC TACTATCGCT ATACCAACGA TGGCTATTTT
AGTTTTAATG AAGCCAATAC CCGCAATTGG GACTATAACA GTCGCCAAAA AAGTGAAATT
CAATTCAACA TCAGCCAGAC AATATTTGAT GGGGTAAGTC TGTATGCCTC CGGTTCGCAG
CAAGACTATT GGGGCAATAA CGATAAAAAC AGGAATATCT CTGTTGGGGT TTCCGGCCAG
CAATGGGGAG TTGGTTACAG CCTGAATTAT CAATACAGCC GCTACACTGA TCAAAATAAT
GACCGCGCAC TCTCTTTGAA TCTCAGTATT CCGTTAGAAC GCTGGTTACC GCGTAGCCGG
GTTTCCTATC AGATGACCAG CCAGAAAGAT CGCCCAACCC AACATGAAAT GCGTCTTGAT
GGCTCACTGC TGGATGATGG TCGCCTGAGC TATAGCCTGG AACAAAGTCT GGATGACGAT
AACAACCATA ACAGTAGCCT GAACGCCAGT TACCGTTCAC CTTATGGCAC CTTCAGTGCC
GGATACAGCT ACGGTAATGA CAGCAGCCAA TACAATTACG GCGTTACCGG CGGCGTGGTT
ATCCATCCTC ATGGCGTGAC GCTCTCGCAA TATCTGGGCA ACGCTTTTGC GCTTATCGAT
GCTAACGGAG CATCTGGCGT GAGGATACAA AACTATCCGG GGATTGCTAC CGATCCTTTT
GGCTATGCAG TGGTTCCTTA TCTCACAACT TATCAGGAAA ACCGTCTCTC GGTAGATACT
ACGCAGCTGC CCGATAACGT CGATCTTGAA CAAACAACAC AGTTTGTGGT GCCCAACAGA
GGTGCAATGG TAGCGGCGCG TTTCAACGCC AATATCGGTT ATCGCGTACT TGTTACAGTC
AGCGATCGCA ACGGTAAACC GTTGCCCTTT GGCGCTCTTG CCAGCAACGA TGATACGGGG
CAACAAAGTA TCGTCGATGA GGGCGGCATA CTATATCTCT CTGGGATATC GAGTAAATCA
CAAAGCTGGA CTGTACGCTG GGGAAATCAG GCAGATCAAC AATGTCAGTT TGCTTTCAGT
ACACCGGATT CAGAACCTAC AACCTCTGTA TTACAAGGCA CAGCGCAGTG CCATTAA
|
|---|
| Protein sequence | MPQRHHQGHK RTPKQLALII KRCLPMVLTG SGMLCTTANA EEYYFDPIML ETTKSGMQTT
DLSRFSKKYA QLPGTYQVDI WLNKKKVSQK KITFTANAEQ LLQPQFTVEQ LRELGIKVDE
IPALAEKDDD SVINSLEQII PGTAAEFDFN HQQLNLSIPQ IALYRDARGY VSPSRWDDGI
PTLFTNYSFT GSDNRYRQGN RSQRQYLNMQ NGANFGPWRL RNYSTWTRND QTSSWNTISS
YLQRDIKALK SQLLLGESAT SGSIFSSYTF TGVQLASDDN MLPNSQRGFA PTVRGIANSS
AIVTIRQNGY VIYQSNVSAG AFEINDLYPS SNSGDLEVTI EESDGTQRRF IQPYSSLPMM
QRPGHLKYSA TAGRYRADAN SDSKEPEFAE ATAIYGLNNT FTLYGGLLGS EDYYALGIGI
GGTLGALGAL SMDINRADTQ FDNQHSFHGY QWRTQYIKDI PETNTNIAVS YYRYTNDGYF
SFNEANTRNW DYNSRQKSEI QFNISQTIFD GVSLYASGSQ QDYWGNNDKN RNISVGVSGQ
QWGVGYSLNY QYSRYTDQNN DRALSLNLSI PLERWLPRSR VSYQMTSQKD RPTQHEMRLD
GSLLDDGRLS YSLEQSLDDD NNHNSSLNAS YRSPYGTFSA GYSYGNDSSQ YNYGVTGGVV
IHPHGVTLSQ YLGNAFALID ANGASGVRIQ NYPGIATDPF GYAVVPYLTT YQENRLSVDT
TQLPDNVDLE QTTQFVVPNR GAMVAARFNA NIGYRVLVTV SDRNGKPLPF GALASNDDTG
QQSIVDEGGI LYLSGISSKS QSWTVRWGNQ ADQQCQFAFS TPDSEPTTSV LQGTAQCH
|
|---|
| |