| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcDH1_0055 |
|---|
| Symbol | |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli DH1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001637 |
|---|
| Strand | - |
|---|
| Start bp | 59254 |
|---|
| End bp | 61362 |
|---|
| Gene Length | 2109 bp |
|---|
| Protein Length | 702 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | (p)ppGpp synthetase I, SpoT/RelA |
|---|
| Protein accession | ACX37753 |
|---|
| Protein GI | 260447331 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 51 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTATCTGT TTGAAAGCCT GAATCAACTG ATTCAAACCT ACCTGCCGGA AGACCAAATC
AAGCGTCTGC GGCAGGCGTA TCTCGTTGCA CGTGATGCTC ACGAGGGGCA AACACGTTCA
AGCGGTGAAC CCTATATCAC GCACCCGGTA GCGGTTGCCT GCATTCTGGC CGAGATGAAA
CTCGACTATG AAACGCTGAT GGCGGCGCTG CTGCATGACG TGATTGAAGA TACTCCCGCC
ACCTACCAGG ATATGGAACA GCTTTTTGGT AAAAGCGTCG CCGAGCTGGT AGAGGGGGTG
TCGAAACTTG ATAAACTCAA GTTCCGCGAT AAGAAAGAGG CGCAGGCCGA AAACTTTCGC
AAGATGATTA TGGCGATGGT GCAGGATATC CGCGTCATCC TCATCAAACT TGCCGACCGT
ACCCACAACA TGCGCACGCT GGGCTCACTT CGCCCGGACA AACGTCGCCG CATCGCCCGT
GAAACTCTCG AAATTTATAG CCCGCTGGCG CACCGTTTAG GTATCCACCA CATTAAAACC
GAACTCGAAG AGCTGGGTTT TGAGGCGCTG TATCCCAACC GTTATCGCGT AATCAAAGAA
GTGGTGAAAG CCGCGCGCGG CAACCGTAAA GAGATGATCC AGAAGATTCT TTCTGAAATC
GAAGGGCGTT TGCAGGAAGC GGGAATACCG TGCCGCGTCA GTGGTCGCGA GAAGCATCTT
TATTCGATTT ACTGCAAAAT GGTGCTCAAA GAGCAGCGTT TTCACTCGAT CATGGACATC
TACGCTTTCC GCGTGATCGT CAATGATTCT GACACCTGTT ATCGCGTGCT GGGCCAGATG
CACAGCCTGT ACAAGCCGCG TCCGGGCCGC GTGAAAGACT ATATCGCCAT TCCAAAAGCG
AACGGCTATC AGTCTTTGCA CACCTCGATG ATCGGCCCGC ACGGTGTGCC GGTTGAGGTC
CAGATCCGTA CCGAAGATAT GGACCAGATG GCGGAGATGG GTGTTGCCGC GCACTGGGCT
TATAAAGAGC ACGGCGAAAC CAGTACTACC GCACAAATCC GCGCCCAGCG CTGGATGCAA
AGCCTGCTGG AGCTGCAACA GAGCGCCGGT AGTTCGTTTG AATTTATCGA GAGCGTTAAA
TCCGATCTCT TCCCGGATGA GATTTACGTT TTCACACCGG AAGGGCGCAT TGTCGAGCTG
CCTGCCGGTG CAACGCCCGT CGACTTCGCT TATGCAGTGC ATACCGATAT CGGTCATGCC
TGCGTGGGCG CACGCGTTGA CCGCCAGCCT TACCCGCTGT CGCAGCCGCT TACCAGCGGT
CAAACCGTTG AAATCATTAC CGCTCCGGGC GCTCGCCCGA ATGCCGCTTG GCTGAACTTT
GTCGTTAGCT CGAAAGCGCG CGCCAAAATT CGTCAGTTGC TGAAAAACCT CAAGCGTGAT
GATTCTGTAA GCCTGGGCCG TCGTCTGCTC AACCATGCTT TGGGTGGTAG CCGTAAGCTG
AATGAAATCC CGCAGGAAAA TATTCAGCGC GAGCTGGATC GCATGAAGCT GGCAACGCTT
GACGATCTGC TGGCAGAAAT CGGACTTGGT AACGCAATGA GCGTGGTGGT CGCGAAAAAT
CTGCAACATG GGGACGCCTC CATTCCACCG GCAACCCAAA GCCACGGACA TCTGCCCATT
AAAGGTGCCG ATGGCGTGCT GATCACCTTT GCGAAATGCT GCCGCCCTAT TCCTGGCGAC
CCGATTATCG CCCACGTCAG CCCCGGTAAA GGTCTGGTGA TCCACCATGA ATCCTGCCGT
AATATCCGTG GCTACCAGAA AGAGCCAGAG AAGTTTATGG CTGTGGAATG GGATAAAGAG
ACGGCGCAGG AGTTCATCAC CGAAATCAAG GTGGAGATGT TCAATCATCA GGGTGCGCTG
GCAAACCTGA CGGCGGCAAT TAACACCACG ACTTCGAATA TTCAAAGTTT GAATACGGAA
GAGAAAGATG GTCGCGTCTA CAGCGCCTTT ATTCGTCTGA CCGCTCGTGA CCGTGTGCAT
CTGGCGAATA TCATGCGCAA AATCCGCGTG ATGCCAGACG TGATTAAAGT CACCCGAAAC
CGAAATTAA
|
|---|
| Protein sequence | MYLFESLNQL IQTYLPEDQI KRLRQAYLVA RDAHEGQTRS SGEPYITHPV AVACILAEMK
LDYETLMAAL LHDVIEDTPA TYQDMEQLFG KSVAELVEGV SKLDKLKFRD KKEAQAENFR
KMIMAMVQDI RVILIKLADR THNMRTLGSL RPDKRRRIAR ETLEIYSPLA HRLGIHHIKT
ELEELGFEAL YPNRYRVIKE VVKAARGNRK EMIQKILSEI EGRLQEAGIP CRVSGREKHL
YSIYCKMVLK EQRFHSIMDI YAFRVIVNDS DTCYRVLGQM HSLYKPRPGR VKDYIAIPKA
NGYQSLHTSM IGPHGVPVEV QIRTEDMDQM AEMGVAAHWA YKEHGETSTT AQIRAQRWMQ
SLLELQQSAG SSFEFIESVK SDLFPDEIYV FTPEGRIVEL PAGATPVDFA YAVHTDIGHA
CVGARVDRQP YPLSQPLTSG QTVEIITAPG ARPNAAWLNF VVSSKARAKI RQLLKNLKRD
DSVSLGRRLL NHALGGSRKL NEIPQENIQR ELDRMKLATL DDLLAEIGLG NAMSVVVAKN
LQHGDASIPP ATQSHGHLPI KGADGVLITF AKCCRPIPGD PIIAHVSPGK GLVIHHESCR
NIRGYQKEPE KFMAVEWDKE TAQEFITEIK VEMFNHQGAL ANLTAAINTT TSNIQSLNTE
EKDGRVYSAF IRLTARDRVH LANIMRKIRV MPDVIKVTRN RN
|
|---|
| |