Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECD_04186 |
Symbol | fimD |
ID | 0 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli BL21(DE3) |
Kingdom | Bacteria |
Replicon accession | CP001509 |
Strand | + |
Start bp | 4454375 |
End bp | 4457011 |
Gene Length | 2637 bp |
Protein Length | 878 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | |
Product | outer membrane usher protein, type 1 fimbrial synthesis |
Protein accession | ACT45967 |
Protein GI | 253980297 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCATATC TGAATTTAAG ACTTTACCAG CGAAACACAC AATGCTTGCA TATTCGTAAG CATCGTTTGG CTGGTTTTTT TGTCCGACTC GTTGTCGCCT GTGCTTTTGC CGCACAGGCA CCTTTGTCAT CTGCCGACCT CTATTTTAAT CCGCGCTTTT TAGCGGATGA TCCCCAGGCT GTGGCCGATT TATCGCGTTT TGAAAATGGG CAAGAATTAC CGCCAGGGAC GTATCGCGTC GATATCTATT TGAATAATGG TTATATGGCA ACGCGTGATG TCACATTTAA TACGGGCGAC AGTGAACAAG GGATTGTTCC CTGCCTGACA CGCGCGCAAC TCGCCAGTAT GGGGCTGAAT ACGGCTTCTG TCGCCGGTAT GAATCTGCTG GCGGATGATG CCTGTGTGCC ATTAACCACA ATGGTCCAGG ACGCTACTGC GCATCTGGAT GTTGGTCAGC AGCGACTGAA CCTGACGATC CCTCAGGCAT TTATGAGTAA TCGCGCGCGT GGTTATATTC CTCCTGAGTT ATGGGATCCC GGTATTAATG CCGGATTGCT CAATTATAAT TTCAGCGGAA ATAGTGTACA GAATCGGATT GGGGGTAACA GCCATTATGC ATATTTAAAC CTACAGAGTG GGTTAAATAT TGGTGCGTGG CGTTTACGCG ACAATACCAC CTGGAGTTAT AACAGTAGCG ACAGATCATC AGGTAGCAAA AATAAATGGC AGCATATCAA TACCTGGCTT GAGCGAGACA TAATACCGTT ACGTTCCCGG CTGACGCTGG GTGATGGTTA TACTCAGGGC GATATTTTCG ATGGTATTAA CTTTCGCGGC GCACAATTGG CCTCAGATGA CAATATGTTA CCCGATAGTC AAAGAGGATT TGCCCCGGTG ATCCACGGTA TTGCTCGTGG TACTGCACAG GTCACTATTA AACAAAATGG GTATGACATT TATAATAGTA CGGTGCCACC GGGGCCTTTT ACCATCAACG ATATCTATGC CGCAGGTAAT AGTGGTGACT TGCAGGTAAC GATCAAAGAG GCTGACGGCA GCACGCAGAT TTTTACCGTA CCCTATTCGT CAGTCCCGCT TTTGCAACGT GAAGGGCATA CTCGTTATTC CATTACGGCA GGAGAATACC GTAGTGGAAA TGCGCAGCAG GAAAAACCCC GCTTTTTCCA GAGTACATTA CTCCACGGCC TTCCGGCTGG CTGGACAATA TATGGTGGAA CGCAACTGGC GGATCGTTAT CGTGCTTTTA ATTTCGGTAT CGGGAAAAAC ATGGGGGCAC TGGGCGCTCT GTCTGTGGAT ATGACGCAGG CTAATTCCAC ACTTCCCGAT GACAGTCAGC ATGACGGACA ATCGGTGCGT TTTCTCTATA ACAAATCGCT CAATGAATCA GGCACGAATA TTCAGTTAGT GGGTTACCGT TATTCGACCA GCGGATATTT TAATTTCGCT GATACAACAT ACAGTCGAAT GAATGGCTAC AACATCGAAA CACAGGACGG AGTTATTCAG GTTAAGCCGA AATTCACCGA CTATTACAAC CTCGCTTATA ACAAACGCGG GAAATTACAA CTCACCGTTA CTCAGCAACT CGGGCGCACA TCAACACTGT ATTTGAGTGG TAGCCATCAA ACTTATTGGG GAACGAGTAA TGTCGATGAG CAATTCCAGG CTGGATTAAA TACTGCGTTC GAAGATATCA ACTGGACGCT CAGCTATAGC CTGACGAAAA ACGCCTGGCA AAAAGGACGG GATCAGATGT TAGCGCTTAA CGTCAATATT CCTTTCAGCC ACTGGCTGCG TTCTGACAGT AAATCTCAGT GGCGACATGC CAGTGCCAGC TACAGCATGT CACACGATCT CAACGGTCGG ATGACCAATC TGGCTGGTGT ATACGGTACG TTGCTGGAAG ACAACAACCT CAGCTATAGC GTGCAAACCG GCTATGCCGG GGGAGGCGAT GGAAATAGCG GAAGTACAGG CTACGCCACG CTGAATTATC GCGGTGGTTA CGGCAATGCC AATATCGGTT ACAGCCATAG CGATGATATT AAGCAGCTCT ATTACGGAGT CAGCGGTGGG GTACTGGCTC ATGCCAATGG CGTAACGCTG GGGCAGCCGT TAAACGATAC GGTGGTGCTT GTTAAAGCGC CTGGCGCAAA AGATGCAAAA GTCGAAAACC AGACGGGGGT GCGTACCGAC TGGCGTGGTT ATGCCGTGCT GCCTTATGCC ACTGAATATC GGGAAAATAG AGTGGCGCTG GATACCAATA CCCTGGCTGA TAACGTCGAT TTAGATAACG CGGTTGCTAA CGTTGTTCCC ACTCGTGGGG CGATCGTGCG AGCAGAGTTT AAAGCGCGCG TTGGGATAAA ACTGCTCATG ACGCTGACCC ACAATAATAA GCCGCTGCCG TTTGGGGCGA TGGTGACATC AGAGAGTAGC CAGAGTAGCG GCATTGTTGC GGATAATGGT CAGGTTTACC TCAGCGGAAT GCCTTTAGCG GGAAAAGTTC AGGTGAAATG GGGAGAAGAG GAAAATGCTC ACTGTGTCGC CAATTATCAA CTGCCACCAG AGAGTCAGCA GCAGTTATTA ACCCAGCTAT CAGCTGAATG TCGTTAA
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Protein sequence | MSYLNLRLYQ RNTQCLHIRK HRLAGFFVRL VVACAFAAQA PLSSADLYFN PRFLADDPQA VADLSRFENG QELPPGTYRV DIYLNNGYMA TRDVTFNTGD SEQGIVPCLT RAQLASMGLN TASVAGMNLL ADDACVPLTT MVQDATAHLD VGQQRLNLTI PQAFMSNRAR GYIPPELWDP GINAGLLNYN FSGNSVQNRI GGNSHYAYLN LQSGLNIGAW RLRDNTTWSY NSSDRSSGSK NKWQHINTWL ERDIIPLRSR LTLGDGYTQG DIFDGINFRG AQLASDDNML PDSQRGFAPV IHGIARGTAQ VTIKQNGYDI YNSTVPPGPF TINDIYAAGN SGDLQVTIKE ADGSTQIFTV PYSSVPLLQR EGHTRYSITA GEYRSGNAQQ EKPRFFQSTL LHGLPAGWTI YGGTQLADRY RAFNFGIGKN MGALGALSVD MTQANSTLPD DSQHDGQSVR FLYNKSLNES GTNIQLVGYR YSTSGYFNFA DTTYSRMNGY NIETQDGVIQ VKPKFTDYYN LAYNKRGKLQ LTVTQQLGRT STLYLSGSHQ TYWGTSNVDE QFQAGLNTAF EDINWTLSYS LTKNAWQKGR DQMLALNVNI PFSHWLRSDS KSQWRHASAS YSMSHDLNGR MTNLAGVYGT LLEDNNLSYS VQTGYAGGGD GNSGSTGYAT LNYRGGYGNA NIGYSHSDDI KQLYYGVSGG VLAHANGVTL GQPLNDTVVL VKAPGAKDAK VENQTGVRTD WRGYAVLPYA TEYRENRVAL DTNTLADNVD LDNAVANVVP TRGAIVRAEF KARVGIKLLM TLTHNNKPLP FGAMVTSESS QSSGIVADNG QVYLSGMPLA GKVQVKWGEE ENAHCVANYQ LPPESQQQLL TQLSAECR
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