Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_3884 |
Symbol | rsmB |
ID | 5388152 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 4376896 |
End bp | 4378185 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640866915 |
Product | 16S rRNA methyltransferase B |
Protein accession | YP_001402832 |
Protein GI | 153947745 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.002095 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAATA CATATAATCT CCGCAGTATC GCTGCTAAAG CAATTAGTCA GGTATTGGAT CAGGGCCAAT CGCTCAGTGC CGTTTTGCCT GAATTACAAA AAAATATTTC CGATAAAGAT CGCGCATTGC TGCAGGAACT GTGTTTTGGC ACTCTGCGAG TCTTACCACA GCTAGAATGG TGTATTCAAC AACTTATGGC ACGCCCGATG ACGGGTAAAC AACGTGTTTT TCATTACCTG ATTATGGTTG GGCTCTATCA GTTGATTTAC ACTCGGATTC CGCCACATGC GGCGTTGGCT GAAACGGTCG AAGGCGCAAC AGTACTGAAA CGTCCACAAT TAAAAGGACT TATCAATGGT GTATTACGCC AATTTCAGCG TCAACAAGTG GAATTACTGG AACGTGCTGT AAATAACGAT AGCCACTATC TGCATCCTAG TTGGTTGTTG GCCCGCATTA AACAAGCCTA TCCAGCACAG TGGCAGCAAA TTTTGGATGC CAATAACCAA AGACCGCCCA TGTGGCTACG TGTAAATCGC CTGCATCATT CTCGTAGTGA ATACCTCGAA CTGTTAACAC AGGCTGATAT TAATGCGGAG CCTCACCCTA TTTATCGTGA TGCTGTGCGC CTTATCACTC CTTGTGCCGT CAATCATCTA CCTGGCTTTG AACTTGGTTG GGTAACCGTA CAAGATGCTT CGGCTCAAGG TTGTGTTGAC CTACTCGATC CCCAAAATGG TGAGCAGATC CTTGATTTAT GTGCAGCCCC TGGAGGTAAA ACCACTCATA TTCTGGAAGC CGCACCAAAG GCTCATGTAT TAGCCGTAGA TATTGATGAA CAGCGACTCA GCCGAGTTAA AGAGAATTTA CAACGCCTGC AATTACAAGC CGTAGTCCGT GTTGGTGATG GCCGAGCACC TGACACATGG TGCGGTGATC AGCAATTTGA TCGTATTCTA TTGGATGCAC CTTGTTCTGC AACCGGTGTT ATTCGCCGCC ATCCAGATAT TAAATGGCTG CGTCGGGACC GTGATATTTC CGAATTGGCC CAACTACAAT CAGAAATCAT TGAGGCTATT TGGCCTAAAC TGAAACATGG TGGAGTACTA GTTTATGCTA CCTGTTCAAT ATTGCCGGAA GAGAACCAAC AGCAGATTGC CGCTTTCCTA CAACGGCATC CCGAAGCACA GTTGACCGAA ACCGGTACTA CAGCAGCGCC TGGTAAACAA AACCTTCCAC ATCCTGAGGA CGGTGATGGT TTCTTCTACG CAAAGATAAT CAAAAAATAG
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Protein sequence | MKNTYNLRSI AAKAISQVLD QGQSLSAVLP ELQKNISDKD RALLQELCFG TLRVLPQLEW CIQQLMARPM TGKQRVFHYL IMVGLYQLIY TRIPPHAALA ETVEGATVLK RPQLKGLING VLRQFQRQQV ELLERAVNND SHYLHPSWLL ARIKQAYPAQ WQQILDANNQ RPPMWLRVNR LHHSRSEYLE LLTQADINAE PHPIYRDAVR LITPCAVNHL PGFELGWVTV QDASAQGCVD LLDPQNGEQI LDLCAAPGGK TTHILEAAPK AHVLAVDIDE QRLSRVKENL QRLQLQAVVR VGDGRAPDTW CGDQQFDRIL LDAPCSATGV IRRHPDIKWL RRDRDISELA QLQSEIIEAI WPKLKHGGVL VYATCSILPE ENQQQIAAFL QRHPEAQLTE TGTTAAPGKQ NLPHPEDGDG FFYAKIIKK
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