| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1382 |
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| Symbol | |
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| ID | 6090612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 1522754 |
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| End bp | 1525885 |
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| Gene Length | 3132 bp |
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| Protein Length | 1043 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641596446 |
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| Product | aminoglycoside/multidrug efflux system |
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| Protein accession | YP_001720129 |
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| Protein GI | 170023624 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAATT TTTTCATCGA CCGCCCGATT TTTGCCTGGG TATTGGCGAT AATTTTGTGT
CTCACCGGCG CATTGGCAAT CTCGACACTC CCTGTCGAAC AATACCCGAA TTTGGCCCCC
CCGAATGTAC GTATCAGCGC CAGCTACCCC GGAGCCTCTG CTCAAACACT GGAAAATACC
GTTACCCAAG TGATTGAACA AAGCATGACC GGCCTGGATA ACCTGTTGTA TATGTCATCA
CAAAGCAGCA ATTCAGGTAG CGCCAGTGTC ACGCTCACGT TTCAGGCGGG TACTAACCCT
AACGAAGCGA TGCAGCAGGT ACAGAATCAA CTGCAATCAG CCATCAAGAG GCTGCCCCAA
GACGTACAAC AACAAGGGGT TTCCGTTTCA AAATCGGGTG ATAACACCTT GATGATGGTG
GCGTTTGTCT CCACTGACGG CAGTATGGAT AAACAAGATA TCTCCGATTA TGTCGCCAGT
AATCTGCAAG ACCCACTCAG CAGAATTGAA GGGGTCGGCA GCGTCGATGC CTTTGGTTCA
CAATATGCGA TGCGTATTTG GCTCGATCCG AATAAGCTTA CTAACTATCA GCTGACAACG
AGTGATATTG TCAGTGCGAT TCAATCCCAG AATACTCAGG TCGCCGTAGG TCAATTGGGC
GGAACCCCCG CCGTTGATAA TCAGGCATTA AACGCGACCA TCAATGCCCA ATCCCAGCTA
CAAACACCCG AAGAGTTTCG GGAAATTACG CTACGGGTCA ATCAGGACGG TTCACTGGTC
ACCCTGGGTG ATGTCGCAAA AATAGAGCTG GGCTCCGAGA AGTACGATTA TCTCAGCCGC
TTCAACGGCC AAGCCGCCTC AGGCATGGGG ATTAAACTGG CTTCCGGAGC CAATGAATTA
CAAACCGATA AACGGGTCAA AGCCCGGCTT GCCGAATTGG CACCGTTCTT CCCTCACGGT
TTAGAAGCCA AAATCGCCTA CGAAACCACA CCGTTTGTAC AAGCGTCCAT TAAGGACGTG
GTGAAAACGC TGCTGGAAGC CATTCTGTTG GTTTTCTTGG TCATGTATCT CTTTTTACAG
AACTTCCGCG CAACCTTGAT CCCAACGGTT GCCGTACCGG TGGTGCTATT GGGCACCTTT
GCCGTGCTAT CGGCATTTGG CTTTAGTATT AATACGTTAA CCATGTTTGC CATTGTTCTG
GCTATCGGGC TGTTGGTGGA TGACGCCATT GTGGTGGTGG AAAACGTCGA ACGGGTGATG
AGCGAAGAAG GGCTGGATCC GCGCGAGGCC ACACGAAAAT CGATGGGGCA AATTCAAGGC
GCACTGATCG GGATAGCGCT GGTACTGTCT GCCGTATTTA TTCCAATGGC CTTCTTTGGC
GGCACCACCG GGGCTATCTA TCGTCAGTTC TCCATTACTA TCGTTTCGGC CATGGTGCTG
TCGGTATTGG TCGCGTTGAT CCTGACACCG GCCATGTGTG CCACCCTACT TAAACCCATT
GCACCGGGGC ATCATCACGC TAAACGGGGG TTTTTCGGTT GGTTTAACCG CATGTTTGAC
CGTAATTCTC ACCGTTACGA AAGAGGTGTC GCGCGCGTAT TGCATCACAG CTTGCGCTAC
ATGCTGCTGT ATTTACTGTT GCTCGGCGGG CTGGCCTTGC TATTCCTTAA ATTACCCACC
TCTTTCCTGC CATTGGAAGA CCGTGGTGTC TTTATGGCTC AGGTGCAACT TCCGGTTGGA
TCAACTCAGC AACAGACACT GAAAGTGGTT GAGAAAGTTG AGAATTACTT CCTGACAGAA
GAGAAAAACA ACGTATTATC CGTATTCGCT ACCGTCGGCT CTGGCCCTGG CGGAAATGGG
CAAAACGTAG CACGCCTGTT TATTCGCCTT GCCGACTGGG ATCAACGCAC CGCCAGCACC
GATTCCTCAT TCGCTATTAT TGAACGAGCG ACTAAAGAAC TCAGTAAAAT TGTTGAAGCG
AAGGTGTCGG TCAGTAGCCC GCCAGCAATT TCAGGTTTAG GTGGGTCGTC AGGTTTCGAT
ATGGAATTAC AGGACCATGG CGGCCATGGC CATGATAAAT TGATGGCCGC CCGCAACCAA
TTGTTGCAGA TGGCGTCGCA GGAACCCGCG TTAACCCGAG TGCGGCATAA CGGGCTGGAT
GATAGCCCAC AGTTGCAGAT TGATATTGAT CAACGCAAAG CGCAAGCACT GGGCGTCTCT
CTGAATGACA TTAACAGCAC GCTGAAAACC GCCTGGGGCT CAACCTATGT CAATGATTTT
GTTGACCGTG GACGGGTGAA GAAGGTGTAT GTTCAATCAG AAGCCACGGC CCGTATGCTG
CCGGAAGACG TCAACAAATG GTATGTGCGC AATAAAAATG GCGGCATGGT GCCTTTCTCC
GCCTTCTCTA CTACCCGATG GGAATATGGC TCTCCCCGCC TGGAGCGCTA CAACGGCTAT
TCAGCACTGG AAATTGTCGG TGAAGCGGCT TCTGGAGTCA GTACCGGTAC CGCGATGGAT
GTGATGGAAA AACTGGTCAG CCAATTGCCC AATGGCTTTG GTTTAGAGTG GACCGGCATG
TCTTATCAAG AGCGATTGTC CGGCTCTCAG GCACCCGCCC TCTATGCTAT CTCGCTACTG
GTGGTCTTCC TCTGCCTGGC TGCATTGTAT GAGAGCTGGT CAATCCCATT CTCCGTGATG
CTGGTGGTCC CGTTAGGGGT GATAGGTGCT GTTGCAGCCA CTTGGATGCG TGGGCTGGAA
AATGATGTTT ACTTCCAAGT CGGTCTATTA ACCATCATTG GGCTCTCGGC CAAGAATGCC
ATTTTGATTG TTGAGTTTGC CAATGAACTG AATAACCGAG GTAAGGACCT GGTCGAGGCA
ACACTGGAGG CCTCTCGCCA GCGATTACGG CCTATTTTGA TGACCTCGCT GGCCTTTATT
TTTGGTGTAT TGCCGATGGC AATCAGCCAG GGCGCGGGTT CCGGTAGCCA ACATGCGGTG
GGCACCGGCG TAATGGGCGG GATGATCTCA GCCACTGTAC TGGCTATTTT CTTTGTGCCC
CTGTTCTTTG TCTTGGTACG TCGCCGTTTT CCCGGCAGAA TAATACCGAA CAAAGAGATA
AACCCTAAAT AG
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| Protein sequence | MANFFIDRPI FAWVLAIILC LTGALAISTL PVEQYPNLAP PNVRISASYP GASAQTLENT
VTQVIEQSMT GLDNLLYMSS QSSNSGSASV TLTFQAGTNP NEAMQQVQNQ LQSAIKRLPQ
DVQQQGVSVS KSGDNTLMMV AFVSTDGSMD KQDISDYVAS NLQDPLSRIE GVGSVDAFGS
QYAMRIWLDP NKLTNYQLTT SDIVSAIQSQ NTQVAVGQLG GTPAVDNQAL NATINAQSQL
QTPEEFREIT LRVNQDGSLV TLGDVAKIEL GSEKYDYLSR FNGQAASGMG IKLASGANEL
QTDKRVKARL AELAPFFPHG LEAKIAYETT PFVQASIKDV VKTLLEAILL VFLVMYLFLQ
NFRATLIPTV AVPVVLLGTF AVLSAFGFSI NTLTMFAIVL AIGLLVDDAI VVVENVERVM
SEEGLDPREA TRKSMGQIQG ALIGIALVLS AVFIPMAFFG GTTGAIYRQF SITIVSAMVL
SVLVALILTP AMCATLLKPI APGHHHAKRG FFGWFNRMFD RNSHRYERGV ARVLHHSLRY
MLLYLLLLGG LALLFLKLPT SFLPLEDRGV FMAQVQLPVG STQQQTLKVV EKVENYFLTE
EKNNVLSVFA TVGSGPGGNG QNVARLFIRL ADWDQRTAST DSSFAIIERA TKELSKIVEA
KVSVSSPPAI SGLGGSSGFD MELQDHGGHG HDKLMAARNQ LLQMASQEPA LTRVRHNGLD
DSPQLQIDID QRKAQALGVS LNDINSTLKT AWGSTYVNDF VDRGRVKKVY VQSEATARML
PEDVNKWYVR NKNGGMVPFS AFSTTRWEYG SPRLERYNGY SALEIVGEAA SGVSTGTAMD
VMEKLVSQLP NGFGLEWTGM SYQERLSGSQ APALYAISLL VVFLCLAALY ESWSIPFSVM
LVVPLGVIGA VAATWMRGLE NDVYFQVGLL TIIGLSAKNA ILIVEFANEL NNRGKDLVEA
TLEASRQRLR PILMTSLAFI FGVLPMAISQ GAGSGSQHAV GTGVMGGMIS ATVLAIFFVP
LFFVLVRRRF PGRIIPNKEI NPK
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