| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_4436 |
|---|
| Symbol | |
|---|
| ID | 4692192 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | - |
|---|
| Start bp | 4898986 |
|---|
| End bp | 4900044 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639852185 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_999157 |
|---|
| Protein GI | 121611350 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00650478 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.12651 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCAA AGGCCGCGCT GCCCAGCCCC GCACCCGCCA TGACCACCAT GACCACGCCA
GCGGCCGCCC CGGCCCGGCA CCGCGCCGTG CTGGGCCAGC TCAGCGACAT GGACCTGCGC
CTGTTGCAGG TCTTCAAGAG CGTGGTCGAA TGTGGCGGCA TGTCGGCCGC CGAACTGGAA
CTCAATATCG GCACCAGCAC CGTCAGCCGC CACATGAAAG ACCTGGAAAC CCGGCTCGGC
CTGACGCTGT GCCGCCGTGG GCGGGCCGGT TTTGCGCTCA CCGCCGAAGG CCAGCGGGTG
TATGACGAGA CCCTGCGGCT GCTGGCCTCG GTGCACAGCT TTCGCGCCAG CATCGACGAC
ATCCATTCGC GCATGGGCGG GCAACTGGCG CTGGCCATTT TCGACAAGAC CGCCAGCAAC
CCGGCAGCGC GCATCGGCCA GGCCATTGCC GCCTTCGCCG CCACGGCGCC GGATGTACAA
CTGCAACTGC ATGTAGGCTC GATCAACGCG ATCGAGCGCG GCGTCATCGA CGGCAGCTAC
CAGGTGGGCA TCATCCCCGC GCACCGCAGC TCGCAAAGCC TGGCCTATAG CGACCTGTTT
GCCGAGACCA TGCTGCTGTA TGGCGGCGCG GGCCATCCGC TGTGCGCCGC CGCGACCCCC
CCGGCCGACT GGCAGGCACT GCGCAACTAC CCGTTTGCCG GGCTGGGCTA CCACTCGCCG
AACATGGCGC TGAGCCACCA GGCCCGGCTG CAACGCGCGG CCACCGGGTT TGACCAGGAG
TCGATCGCCA CGCTGATCCT GTCGGGCCGC TTCCTCGGCT TTCTGCCCGA CCACTATGCC
GAGGCGTTCG AGCGCCAAGG CCGCATGCAG GCCGTGAACC CGGCGCTGTT TCGCTACGAC
TGCCAGTTCG TCAGCCTGAT GCGCCGCTCG CCCGCACCCA CTCGGGCGGC CCAGGCGTTT
GCCCAATGTT TGCAGCAGGC GCACCGGGCT GTAAGCCCGC CGGCAGGCCA GGCCGCAAGC
CCGCCGGTGA TTCAGGCCGC AGGCCCGCCG GCAGGCTAG
|
|---|
| Protein sequence | MQAKAALPSP APAMTTMTTP AAAPARHRAV LGQLSDMDLR LLQVFKSVVE CGGMSAAELE
LNIGTSTVSR HMKDLETRLG LTLCRRGRAG FALTAEGQRV YDETLRLLAS VHSFRASIDD
IHSRMGGQLA LAIFDKTASN PAARIGQAIA AFAATAPDVQ LQLHVGSINA IERGVIDGSY
QVGIIPAHRS SQSLAYSDLF AETMLLYGGA GHPLCAAATP PADWQALRNY PFAGLGYHSP
NMALSHQARL QRAATGFDQE SIATLILSGR FLGFLPDHYA EAFERQGRMQ AVNPALFRYD
CQFVSLMRRS PAPTRAAQAF AQCLQQAHRA VSPPAGQAAS PPVIQAAGPP AG
|
|---|
| |