| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_4013 |
|---|
| Symbol | |
|---|
| ID | 4691824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | - |
|---|
| Start bp | 4402068 |
|---|
| End bp | 4403243 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639851760 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_998736 |
|---|
| Protein GI | 121610929 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00118971 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.173861 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTCA TTGTGCGCTT CGCGGCGACC GCCGTTTTTC TTTCCGCCGG ACTCGCCGCC
CATGCACAAA CCAGCGCGCC GATCCGCATC GGCTGGATGG CCTCCTTGAC CGGGCCTCTT
GCCACGGCCG CGATAGGCAT CGACACCGGC GTGCGGTTTG CGGTGGAGGA AATCAACGCG
GCCGGTGGCA TCGATGGCCG CAAGATCGAA TTGCTGACGC GCGATACTGC CGGCGACCCG
AACAAGGCCG CCACTTTCGC CCAGCAACTC ATCCATTCCG ACAAGGCGCA GATCATCCTG
GGGCCGGTCA ATTCCGGCGA GGCGTTGGCG ACGGTGCCGC TGGTCGCGCG CACCGGCACG
CCGAACATCG TCACCGGCGC CGTCGAAGAA CTGACCGACG CCAGGAAGTA CCCGCGCACC
TTCCGCGTCA TCAACACCAC CACGCAGTGG GTGAGCGCCG CCGATGACTA CGTGCTCGAC
GCAATGAAGC GCAGGAAAAT TGCGCTCATC GGCGACACCA CGGGCTACGG CACGGTCAGC
GTGCGCACCG CCACCGAGGA CCTGAAGAAA AAGGGGGTGA CACCGGTCTA CACCGTGCTG
GTCGACCCGA ACAAGACCGA CTTGTCCGAC GAAATCGGCA AGGCGCGCGC GGCCGGCGCC
GAAGTGCTTA TGCCGTGGTC CGCTGCCACC GGCGTGCTGG CGCGGTTGCT GAACGCGCGC
GGCGACGCGG GCTGGGACGT GCCGGTGATT GGCCATCCGT CGCTGATGGC GCTGGCGCTG
AAACAATTGC TGAACAAGCC TTCGTACTGG GAGAACGTCT ACGGCGCCGG CTATGCCGCC
ACTTCCTACG ACGCCAGCGG CAAGCTGCCG CAGCGCACGC AGGCACTGCT CGACAAGATT
CGCCCGAAGC TCGGCGGCAA GGAGGTCGGC ATCCTGCTCT GGTGGATCGG CTTGGGCTAC
GACGCAGTCA AGCTCGCCGA GCATGCGATT CGCAAGGCCG GCTCGACGGA CCCGGCAGCG
ATCCAGAAGG CGCTTGAAGG CACGGTGGAG TTCAAGGCGA TGCTGTCGAC CCTGAGTTAC
GCGCCGGACC AGCGCGACGG CTTCCCGGAC GGCGGCATGG CGATCAACAT CGCCAACACC
TTCAAGGACG GCTGTTTCAA GCGCGCACCG AAGTGA
|
|---|
| Protein sequence | MQFIVRFAAT AVFLSAGLAA HAQTSAPIRI GWMASLTGPL ATAAIGIDTG VRFAVEEINA
AGGIDGRKIE LLTRDTAGDP NKAATFAQQL IHSDKAQIIL GPVNSGEALA TVPLVARTGT
PNIVTGAVEE LTDARKYPRT FRVINTTTQW VSAADDYVLD AMKRRKIALI GDTTGYGTVS
VRTATEDLKK KGVTPVYTVL VDPNKTDLSD EIGKARAAGA EVLMPWSAAT GVLARLLNAR
GDAGWDVPVI GHPSLMALAL KQLLNKPSYW ENVYGAGYAA TSYDASGKLP QRTQALLDKI
RPKLGGKEVG ILLWWIGLGY DAVKLAEHAI RKAGSTDPAA IQKALEGTVE FKAMLSTLSY
APDQRDGFPD GGMAINIANT FKDGCFKRAP K
|
|---|
| |