| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_0678 |
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| Symbol | |
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| ID | 4693313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Verminephrobacter eiseniae EF01-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008786 |
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| Strand | - |
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| Start bp | 758380 |
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| End bp | 760542 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639848455 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_995478 |
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| Protein GI | 121607671 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00783707 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00018208 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGTTCGAGC CGCGCATCAT CCGTGGCAAT GACCAGGTGA TCGGCGCCGC CAAGCCGGTG
CCGCCGCCCG AAGGGGCGCC CAGTTCCTTC CGGTTTGAAG AGGCGCCCAT CGCCGAAGTG
GTGCGCACCA TGCTCGGCGA CATCCTCAAG GTCGATTACG TGCTGCACCC GCCCATCAGC
GGCAGCATCA CGCTGGCGAC GCAGCAGCCA GTGGCGCCAG ACCAGGCCAT CTTCCTGCTG
GAAACGGCGC TCCAGGCCAA CGGCCTGGCC ATGCTGCGCG ACCCGCGCGG CGCCTACCAC
GTAGGCCGGC CGGAAACGCT CAAGGGCATC GGCGCCGCCG TGCGGCAAGC GGGCGTCGGC
AGCGGCCCGC TGCCGCCCGG TTCGGGCGCC GTGGTCGTGC CTTTGCAGTA CATCGGCGCG
GCCGAGATGG CCACCATCCT GCGCCCGATG GTGCCGCCCG AAGCCTTGAT CCGCGTCGAC
ACGGTGCGCA ACCTGCTGGT GCTTGCAGGC AGCCGCGCCC AGGCCGAAGG CTGGCTCGAC
ATCATCAGCA CCTTCGATGT CAACCTCCTC AAGGGCATGT CGGTCGGGGT TTTCCCGCTC
AAGTACGTCT CGGTCAAAGA AGTCGAGGCA GCGCTGCAAT GGTTGAGCAC CGGCGGCGCA
CCCCGTCAGA ACAACCAAGC CGCCGACAGA CCCGTGAGCG CCATTGCCAT GCCCGGGGCG
GCCCCCGGCG GGACGGCGGC CGGGCCGGCA GACAACATGC CGCTGCCGTT GGCCGGCGCC
GTGCGCGTGC TGCCCATCGA GCGCATCAAC AGCATTTTGG TCGTCACGCC ACGGGCCGCC
TATCTCGACG AGGCGCGCCG CTGGATCGAG CGCCTGGACC AGCCCTCGGA CAACAGCGCC
GAGCCGCAAC TGTTCATCTA CCAAGTGCAA AACGTGAACG CGCGCCACCT GGCCTCCGTG
CTCAGTGGCA TCTTCGGCAC GAAGCCAGCC CCCGGCACGG CGGCCAACAG CGGCGTGGCG
CCCGGCTTGC CGGCGGCCAC CACCAGCAGC AACAGCAACA GCAGCAACAG CAGCCCCGTC
ATCGAAGGCT TGTGGCTGGG CACTGGCGCC ATCGGCAGCA GCCAGAGCAG GTTTGGCGGC
TTTCGTTCGG GCAGGTTCGG CTCTGGCCAG GCAACGACGG GCGCGTCCGG CGCACGGGAC
ACGCCATCGG CACCGGCCGT AGCCGCCCTG GGGAACATAC GGGTCATGGC CGATGAACTG
AACAACTCCG TGCTGGTATG GAGCACGCGC GCCGAATACG CCAAGATCGA ATCGACCCTG
CGGCGGCTGG ACCTGCCGCC CACGCAGGTG CTGATCGAGG CCAGCATCAT CGAAGTGACC
CTGAACGACG ACCTGCGCTA CGGACTGCAA TGGGCGTTCA ACGACAGCCG CTCCGGCATC
GACAGGGGCC AGGGCGCGCT CAGCAGCCGC GATGGCACAA GCACCGGCGG CATCCTCGGC
GGCGCGCTCG CCGGCTTTTC CTACGCGCTG AAAAGCCCGG CCGGCGCGGT GCGGGCCATG
CTCAACGTCC TGTCGGCCAA AACCACGGTC AAAGTAGTGG CCAGCCCCTC GCTGATGGTG
CTCGACAACC ACACCGCATC CATTGCCGTA GGCGATCAAA CCCCGATACA GGCCGGCACG
ACCAGCAACC TCGAAGGAAC GGTCACCAGC ACCAACATCG AATACAAAGA CACCGGCGTC
AACCTGGTGG TCACGCCCTC GGTGAACGCC GGCAACATCG TCACCATGCA GATCGACCAA
TCCGTCACCG ACGTGGGCGC CAAGGACGAA GTGACCAACC AGCGCGCCTT CCTGCAACGC
CAACTGTCCA GCAAGGTATC GGTGCGCTCG GGTGAATCCA TCGTGATGGG CGGGCTGATC
CAGGAAAGCA GCAGCAGCAC CAAATCGGGC ATCCCCGTCT TGCACGCCCT GCCGCTGTTC
GGCAACCTCT TTGGCACCAC GGTCAATGAC GGCAGGCGCA CGGAACTATT GGTGATCATC
ACGCCTCGAG TGGTGCGCTC CGACATCGAC ATTCGCCAGG TCAGCGAAGA ACTGCGCGAC
CGGATGAAAG GCTTTGTCGG CCTGCAACAG CCCCCAGCCC TGCAGCCCGC CGTGCAGGAC
TGA
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| Protein sequence | MFEPRIIRGN DQVIGAAKPV PPPEGAPSSF RFEEAPIAEV VRTMLGDILK VDYVLHPPIS
GSITLATQQP VAPDQAIFLL ETALQANGLA MLRDPRGAYH VGRPETLKGI GAAVRQAGVG
SGPLPPGSGA VVVPLQYIGA AEMATILRPM VPPEALIRVD TVRNLLVLAG SRAQAEGWLD
IISTFDVNLL KGMSVGVFPL KYVSVKEVEA ALQWLSTGGA PRQNNQAADR PVSAIAMPGA
APGGTAAGPA DNMPLPLAGA VRVLPIERIN SILVVTPRAA YLDEARRWIE RLDQPSDNSA
EPQLFIYQVQ NVNARHLASV LSGIFGTKPA PGTAANSGVA PGLPAATTSS NSNSSNSSPV
IEGLWLGTGA IGSSQSRFGG FRSGRFGSGQ ATTGASGARD TPSAPAVAAL GNIRVMADEL
NNSVLVWSTR AEYAKIESTL RRLDLPPTQV LIEASIIEVT LNDDLRYGLQ WAFNDSRSGI
DRGQGALSSR DGTSTGGILG GALAGFSYAL KSPAGAVRAM LNVLSAKTTV KVVASPSLMV
LDNHTASIAV GDQTPIQAGT TSNLEGTVTS TNIEYKDTGV NLVVTPSVNA GNIVTMQIDQ
SVTDVGAKDE VTNQRAFLQR QLSSKVSVRS GESIVMGGLI QESSSSTKSG IPVLHALPLF
GNLFGTTVND GRRTELLVII TPRVVRSDID IRQVSEELRD RMKGFVGLQQ PPALQPAVQD
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