Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Veis_0070 |
Symbol | |
ID | 4690595 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Verminephrobacter eiseniae EF01-2 |
Kingdom | Bacteria |
Replicon accession | NC_008786 |
Strand | + |
Start bp | 85661 |
End bp | 86503 |
Gene Length | 843 bp |
Protein Length | 280 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639847856 |
Product | squalene/phytoene synthase |
Protein accession | YP_994881 |
Protein GI | 121607074 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00181146 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACCAC AGCAGTACGT GCAGCAAAAA GCCGTGGCCT CGGGCAGCAG TTTTTATTAC GCCTTTTTGT TTCTGCCCGC GCCGCGCCGC GCGGCGATCA CGGCGTTTTA TGCGTTCTGC CGGGAAGTCG ACGACGTGGT GGATAGCCAA ATGATCGACC CGGGCGTGGC CCGCACCAAG CTGGCCTGGT GGCAGTCGGA AGTGGTCAAG GCCTACGCCG GCCAGCCCAG CCATCCGGTG ATGCAGGCCC TGATGCCACA CACCGCCGAA TACGGCATTG CGCAGCGCCA CTTGCAGGCC GTGATCGACG GCTGCCGGAT GGACCTGGAG CAAACCCGCT ACCTCGACAT TGCGGGCCTG ACCGGCTATT GCCACTTGGT GGCGGGCATC GTGGGCGAGG TCACGGCGCG CATCTTCGGC CAGACCGACG AGCGCACCAC GCAGTACGCA CACATGCTGG GGCTGGCGTT CCAGTTCACC AACATCATCC GCGACGTGGG CGAAGACGCG CTGCTGGGCC GCGTCTACCT GCCGCTGAGC GAGTTGCAGC AATTCGGCGT GAAGGTGCAC GAACTGCTCG AGCGCCGGTA TTCCGACCGC TTCACCGCGC TGATGCGCTT TCAGGCCGAG CGCGCGCACC GCCTGTACGA CCAGGCCCTG GCCCTGCTGC CCGAGGTCGA CCGGCGCGCG CAAAAGCCCG GCCTGATGAT GGCCAGCATC TACCGCACGC TGCTGCGCGA GATCGGGCAT GAGAACTTCC AGGTGCTGCA CCAGCGCATC CGCCTGACAC CGCTGCGCAA GTTCTGGCTG GCGTGGAAGG TGCAGGCGCT GGGGCGCATG TAA
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Protein sequence | MTPQQYVQQK AVASGSSFYY AFLFLPAPRR AAITAFYAFC REVDDVVDSQ MIDPGVARTK LAWWQSEVVK AYAGQPSHPV MQALMPHTAE YGIAQRHLQA VIDGCRMDLE QTRYLDIAGL TGYCHLVAGI VGEVTARIFG QTDERTTQYA HMLGLAFQFT NIIRDVGEDA LLGRVYLPLS ELQQFGVKVH ELLERRYSDR FTALMRFQAE RAHRLYDQAL ALLPEVDRRA QKPGLMMASI YRTLLREIGH ENFQVLHQRI RLTPLRKFWL AWKVQALGRM
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