| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5114 |
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| Symbol | |
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| ID | 7971485 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5424557 |
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| End bp | 5425774 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795708 |
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| Product | Peptidoglycan-binding LysM |
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| Protein accession | YP_002946982 |
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| Protein GI | 239818072 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0439251 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAGC TCCGAATCAC TGTCCGCCAG CGCCCGCATC TTCTCGCCAC GTTGGCTGCC
CTTGCGGTGA TCACTGGCGG TACGACGGCG GCCTGGGCAC AGAACTATCC CGTCACGCCG
CAGCAGCGCG CCACCGCCCA GCAAACCGCC CAGACCGGCG TTCCGCTGAG CGAGCTGGCG
CCCAATGCGC CCGACGAATA CACGGTCAAG CCCGGCGACA CGCTCTGGGC GATCTCGCGC
CTGTACCTGC TGCGTCCCTG GCGCTGGCCG GAACTGTGGG GCATGAACAT CAGCGAGATC
GCGAACCCGC ACCGCATCTA CCCCGGCCAG GTCCTCTACC TGGACAAGAC CGGCGGCCGC
GCGCGCCTGA CCATGCGCCG CGGCGCGGGC GGCAGCGCCG ATGGCGGCAC CATCAAGCTG
TCGCCGCGCA CGCGCTTCGA CTCGCTGGCC GGCATGGCCC TGCCCACGCT CAACCCGAGC
ATCATCGAGC CCTTCCTGAG CGAGCCGATC GTGGTCGATG CCGACACGCT GCAGGCCGCG
CCGCGCATCG TCGCGGGCAA CGACAGCCGC GTCCTGCTGT CGCGCGGCGA CCGTGCCTAT
GCGCGCGGCA ACGCCGAGAC GCCGCTGCTC GAAACGCCCG GCCCGCTGAA GAATTTCCGC
GTGTTCCGCA GCGCCACGCC GCTGAAGGAC CCGGGAACCG GCGAAATCCT CGGCTATGAG
GCGCAGTACC TGGGCAAGGC GCAGCTCCAG CGTGGCGAAT CGACCACGGT CGAGACCACC
AACGACAAGG ACGTCATCAC CGTGGTGCCG GCCAGCGTCG ACATCATTGC GGCGCGCGAG
GAAATCCGCG CCGGCGACCG CCTGCTGCCC GAACCGCCGC GCCAGTTGCT GAGCTATGTG
CCGCGCGCGC CCTCCTCGCA GGTCGAGGGC CGCATCATCT CGGTCTATGG CAACGCGGTG
CAGTTCGCGG CGCAGAACCA GGTGGTGGCC ATCAACAAGG GCACCCGCGA CGGCATCGAC
AGCGGCCACG TGCTGGCCAT CCTGAAGAAC GGCGAGACCA TTCTCGACCG CACCGGCGCG
CGCAAGGAAA CCATCAAGCT GCCGAACGAA CGCATCGGCC TCTTGATGGT GTTCCGGCCC
TTCGAAAAGG TTTCGTACGC ACTGGTGCTC GAGATCACCG ACACTCCGAA GGCGGGCGAC
TTCCTCGTCA ATCCCTGA
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| Protein sequence | MKKLRITVRQ RPHLLATLAA LAVITGGTTA AWAQNYPVTP QQRATAQQTA QTGVPLSELA
PNAPDEYTVK PGDTLWAISR LYLLRPWRWP ELWGMNISEI ANPHRIYPGQ VLYLDKTGGR
ARLTMRRGAG GSADGGTIKL SPRTRFDSLA GMALPTLNPS IIEPFLSEPI VVDADTLQAA
PRIVAGNDSR VLLSRGDRAY ARGNAETPLL ETPGPLKNFR VFRSATPLKD PGTGEILGYE
AQYLGKAQLQ RGESTTVETT NDKDVITVVP ASVDIIAARE EIRAGDRLLP EPPRQLLSYV
PRAPSSQVEG RIISVYGNAV QFAAQNQVVA INKGTRDGID SGHVLAILKN GETILDRTGA
RKETIKLPNE RIGLLMVFRP FEKVSYALVL EITDTPKAGD FLVNP
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