| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1905 |
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| Symbol | |
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| ID | 7971084 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2036880 |
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| End bp | 2037740 |
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| Gene Length | 861 bp |
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| Protein Length | 286 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792505 |
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| Product | lipoprotein, YaeC family |
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| Protein accession | YP_002943819 |
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| Protein GI | 239814909 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1464] ABC-type metal ion transport system, periplasmic component/surface antigen |
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| TIGRFAM ID | [TIGR00363] lipoprotein, YaeC family
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.279671 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGCCGCT TCCCATCGCT TTCCGCCGCG CTGTCGCGCC GCCGCCTGCT GCAATTCGCC
TCGGCCGCCG CCACCGCCGG CGCGGGCCTA CCCGCCTTCG CGGCCCTCAA GGAGCCGCCC
GGCACCACCA AGGTCCTGAA GGTAGGCGTC ACGACCGGGC CGCACGAGCA GACCTTCGAG
GTCGCCAAGC GCGTGGCCGA GCGCGACTAC GGCCTGAAGA TCCAGATCGT GCCCTTCACC
GACTACAGCC GGCCCAACGC CGCGCTCGAT GCCGGCGACC TGGACGCCAA CAGCTTCCAG
CACCGGCCCT TCCTCGCGGC GCAGGTGCGT TCGCGCGGCT ACAGGATCGT CGGCTTCGGC
CGCACCTGGA TCGGCCCCAT CGCGATCTAT TCGCGCAAGT TCAAATCGTT CAAGGACCTG
CCCGAGGGCG CCAGCATCGC CATTCCCAAC GACCCGTCGA ACGAAAGCCG GGTGCTGTTG
CTGCTGCAGA AGGCCGGCGC CATCAAGCTC AAGAGCGGCA TCGACCCGAT CGCGGGCATC
AACGCCACGC CGCGCGACAT CACCGAGAAC CCGCGGAAGT TCCGCTTCGT CGAGATCGAG
GCCGCGCAGC TGCCGCGCAC GCTCGATGAC ACCGACGCCT CGGCCGTCAA CGCCGACTAT
GCCAACAAGG CCGGCCTCAA TCCGGCGCGC GACGGCATCC TGGTCGAGGA CAAGGAAGGC
CCCTATGCCT GCCTGATCGC GGTGCGCGAA CAGGACAAGG AACAGCCCTG GGTGCAGCAG
CTGGTCAAGG CCTACCAGAC CGACGAGGTG CGCGACTTCA TCGTCAAGAC CTTCGCGGGC
GGCGTGCTGC CGGCGTTCTG A
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| Protein sequence | MSRFPSLSAA LSRRRLLQFA SAAATAGAGL PAFAALKEPP GTTKVLKVGV TTGPHEQTFE
VAKRVAERDY GLKIQIVPFT DYSRPNAALD AGDLDANSFQ HRPFLAAQVR SRGYRIVGFG
RTWIGPIAIY SRKFKSFKDL PEGASIAIPN DPSNESRVLL LLQKAGAIKL KSGIDPIAGI
NATPRDITEN PRKFRFVEIE AAQLPRTLDD TDASAVNADY ANKAGLNPAR DGILVEDKEG
PYACLIAVRE QDKEQPWVQQ LVKAYQTDEV RDFIVKTFAG GVLPAF
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