| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1142 |
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| Symbol | |
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| ID | 6986864 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1244482 |
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| End bp | 1245168 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643379521 |
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| Product | RNA psedouridine synthase |
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| Protein accession | YP_002262620 |
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| Protein GI | 209694692 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR01621] pseudouridine synthase Rlu family protein, TIGR01621 |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTCGATA TCCTTTATCA AAATTCAGAT TTTCTTGTTA TCAATAAACA CCCTAATGTT
AGCGTTCATA AAGATGATGG CGACACTTCA TTATTAATTG AACTCGCTAA AGTCACTGGT
GATAAACAGC TTTATTTAAT CCATCGTTTA GACAAAATGA CGTCAGGATT ATTGCTTATT
GGCCGACACC AATCAGCAGC CAGTGAATTA TCACAATTGT TCGCAAAGCG TTTAGTTGAA
AAATACTACC TCGCTATTGG TGATAAAAAG CCTAAGAAAA AACAAGGTCT GGTTATTGGC
GATATGGAAC GCTCACGTAG AGCATCATGG AAGCTAATCA ACAGTAAAGA AAACCCTGCG
ATTACTCAGT TTTTCTCAAC GGCAGCCCAT AATGGCAATC GTCTATTTTT ATGCAAACCG
CATACAGGGA AAACACACCA AATTCGAGTG GCGTTAAAAA GCGTAGGCTC GGGTATTTTA
GGTGATTCAA TTTATAGCTC ATCTAAGGCT GATCGTGGTT ACCTTCATGC TTATGCTTTG
CGATTTACCT ATCAAGAGCA AGCGTTTGAA TTTATTGAAA CACCAAAACA AGGTGAAGAG
TGGCAAGATG ACACCGTTCA AGCAGGGTTA GCGCAATGGC AAACACCGTG GACATTAACT
TGGCCAGAGA TTAAGAAGAA ATCATGA
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| Protein sequence | MFDILYQNSD FLVINKHPNV SVHKDDGDTS LLIELAKVTG DKQLYLIHRL DKMTSGLLLI
GRHQSAASEL SQLFAKRLVE KYYLAIGDKK PKKKQGLVIG DMERSRRASW KLINSKENPA
ITQFFSTAAH NGNRLFLCKP HTGKTHQIRV ALKSVGSGIL GDSIYSSSKA DRGYLHAYAL
RFTYQEQAFE FIETPKQGEE WQDDTVQAGL AQWQTPWTLT WPEIKKKS
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