Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1064 |
Symbol | rnd |
ID | 6986830 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 1156366 |
End bp | 1157490 |
Gene Length | 1125 bp |
Protein Length | 374 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 643379451 |
Product | ribonuclease D (rnase d) |
Protein accession | YP_002262551 |
Protein GI | 209694623 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00409138 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGAATTTG AAATCGTTAA ACACAGCCAA CGTTTAGCTG AAATTTGCCA ACAGGCAAGT AATAAACCTT TTTTAATGCT GGATACTGAG TTCGTACGTA CGAGAACTTT GTATGCACGT TTAGGTTTAA TTCAAATGTT TGATGGTGAA ACATTAGCAT TAGTTGATCC TGTTGAAATT GATGATTTAA CGCCGCTTTG GGATTTATTA AAAAACGAAA GTGTGACAAA AGTTCTTCAT GCTTGTGGTG AAGATTTAGA AGTATTTCAA CATTATGCTG GCTGTATGCC GACACCAATG ATTGATACTC AAATTATGGC GGCATTTTTA GGCTATGGTT TGTCGACAGG CTTTGCGAAA TTAGTGTCTG ATTATTTAGG TGTTGATCTC GATAAAGGTG AATCTCGTAC TGATTGGATG GCGCGTCCTT TATCAGATAA ACAATTGGAT TATGCCGCAG CCGATGTGCA TTATTTATTA CCATTGTTTG AGAAACTACA AGCAGAATTA GCTCAAACAG AGTGGGAAAA AGCAGCGTAT CAAGAATCGT TACTTGCGGT TAAAAAACGT GAAAAACAAC CTGATCCTGA GAAAGCGTAT TTAGATATTA AAAATGCTTG GCAGTTAAAT GGTAAGCAGT TAGCTATTTT AAAAATGGCA GCACAATGGC GATTAGAAGA AGCAAGAAAG CGCGATTTGG CGGTTAACTT TGTTGTACAA GAATTAAACT TATGGAAATT AGCTCGATTT GGACTTCGCA GTAAAGAGCA AATGCTAAAA GAAGAGTTTG ATTCGAGAGA GGTTCAACGT CATGGTGGAA AACTATTGCG TTTCACATAC CTTGCAGATG AGCTAAATGA AAACGAATAT CCAGAAACGT TAACACGATT AATGGATTAT CCGGGCTATA AGCAAATTTT TAAGTTGTTA AAAGATGAAG TAAAAGCGGC CTCTGATCAA TCGGGTTTGA TGCCTGAGTT TTTAGCGTCT AAAAAACAGC TTAATCAATT ATTGTCTTGG AAATGGAAGA AAAACAGTCA CCCTGATTTA AAACCAGACG TATTAAAAGA GTGGAGAGAA GGGCTGCTTG CTGAGCGCTT TATGGCGGTG TTAGATAAAA GCTAA
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Protein sequence | MEFEIVKHSQ RLAEICQQAS NKPFLMLDTE FVRTRTLYAR LGLIQMFDGE TLALVDPVEI DDLTPLWDLL KNESVTKVLH ACGEDLEVFQ HYAGCMPTPM IDTQIMAAFL GYGLSTGFAK LVSDYLGVDL DKGESRTDWM ARPLSDKQLD YAAADVHYLL PLFEKLQAEL AQTEWEKAAY QESLLAVKKR EKQPDPEKAY LDIKNAWQLN GKQLAILKMA AQWRLEEARK RDLAVNFVVQ ELNLWKLARF GLRSKEQMLK EEFDSREVQR HGGKLLRFTY LADELNENEY PETLTRLMDY PGYKQIFKLL KDEVKAASDQ SGLMPEFLAS KKQLNQLLSW KWKKNSHPDL KPDVLKEWRE GLLAERFMAV LDKS
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