Gene VSAL_I1064 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I1064 
Symbolrnd 
ID6986830 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp1156366 
End bp1157490 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content37% 
IMG OID643379451 
Productribonuclease D (rnase d) 
Protein accessionYP_002262551 
Protein GI209694623 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID[TIGR01388] ribonuclease D 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00409138 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGAATTTG AAATCGTTAA ACACAGCCAA CGTTTAGCTG AAATTTGCCA ACAGGCAAGT 
AATAAACCTT TTTTAATGCT GGATACTGAG TTCGTACGTA CGAGAACTTT GTATGCACGT
TTAGGTTTAA TTCAAATGTT TGATGGTGAA ACATTAGCAT TAGTTGATCC TGTTGAAATT
GATGATTTAA CGCCGCTTTG GGATTTATTA AAAAACGAAA GTGTGACAAA AGTTCTTCAT
GCTTGTGGTG AAGATTTAGA AGTATTTCAA CATTATGCTG GCTGTATGCC GACACCAATG
ATTGATACTC AAATTATGGC GGCATTTTTA GGCTATGGTT TGTCGACAGG CTTTGCGAAA
TTAGTGTCTG ATTATTTAGG TGTTGATCTC GATAAAGGTG AATCTCGTAC TGATTGGATG
GCGCGTCCTT TATCAGATAA ACAATTGGAT TATGCCGCAG CCGATGTGCA TTATTTATTA
CCATTGTTTG AGAAACTACA AGCAGAATTA GCTCAAACAG AGTGGGAAAA AGCAGCGTAT
CAAGAATCGT TACTTGCGGT TAAAAAACGT GAAAAACAAC CTGATCCTGA GAAAGCGTAT
TTAGATATTA AAAATGCTTG GCAGTTAAAT GGTAAGCAGT TAGCTATTTT AAAAATGGCA
GCACAATGGC GATTAGAAGA AGCAAGAAAG CGCGATTTGG CGGTTAACTT TGTTGTACAA
GAATTAAACT TATGGAAATT AGCTCGATTT GGACTTCGCA GTAAAGAGCA AATGCTAAAA
GAAGAGTTTG ATTCGAGAGA GGTTCAACGT CATGGTGGAA AACTATTGCG TTTCACATAC
CTTGCAGATG AGCTAAATGA AAACGAATAT CCAGAAACGT TAACACGATT AATGGATTAT
CCGGGCTATA AGCAAATTTT TAAGTTGTTA AAAGATGAAG TAAAAGCGGC CTCTGATCAA
TCGGGTTTGA TGCCTGAGTT TTTAGCGTCT AAAAAACAGC TTAATCAATT ATTGTCTTGG
AAATGGAAGA AAAACAGTCA CCCTGATTTA AAACCAGACG TATTAAAAGA GTGGAGAGAA
GGGCTGCTTG CTGAGCGCTT TATGGCGGTG TTAGATAAAA GCTAA
 
Protein sequence
MEFEIVKHSQ RLAEICQQAS NKPFLMLDTE FVRTRTLYAR LGLIQMFDGE TLALVDPVEI 
DDLTPLWDLL KNESVTKVLH ACGEDLEVFQ HYAGCMPTPM IDTQIMAAFL GYGLSTGFAK
LVSDYLGVDL DKGESRTDWM ARPLSDKQLD YAAADVHYLL PLFEKLQAEL AQTEWEKAAY
QESLLAVKKR EKQPDPEKAY LDIKNAWQLN GKQLAILKMA AQWRLEEARK RDLAVNFVVQ
ELNLWKLARF GLRSKEQMLK EEFDSREVQR HGGKLLRFTY LADELNENEY PETLTRLMDY
PGYKQIFKLL KDEVKAASDQ SGLMPEFLAS KKQLNQLLSW KWKKNSHPDL KPDVLKEWRE
GLLAERFMAV LDKS