Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0823 |
Symbol | |
ID | 6988691 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 915001 |
End bp | 916857 |
Gene Length | 1857 bp |
Protein Length | 618 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 643379227 |
Product | peptidyl-prolyl cis-trans isomerase D |
Protein accession | YP_002262330 |
Protein GI | 209694402 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0677153 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGGATC GAATTCGCGA AGGTTCAACT GGCCTCGTTG TTAAGATCAT TCTCGGTCTA ATTATTTTCT CATTTGTGTT TGCAGGTGTA GGTAGTTATT TAGTCGGTGG TAGTCAACCT CTAGCGGCTA AAGTCGGTGA GCGTGAAATA ACACGAAATG ATTTTGAACA AGTTTATCAA AATGAACGCA ACCGTATGCA ATCTCAACTG GGCGAATATT TTTCGACTCT ACTTGGTGAC CCTGCGTATG TAGAGCAATT CCGAAAGTCA GTTTTAGATC GTATGGTCAA TGATGCTTTA CTCGATAACC AAGCTCAAGA ACTTGGTTTA CGTGTAAGTG ATGAACAAAT ACGCCAAGCA ATTTTATCTA TGCCTCAGTT CCAAAAAGAT GGAAAGTTTG ACGAAGAAAT CTTTAATGTC TCATTACGCC GCGCTGGTTT CACTTCAGAC AGCTTCGCTG AGTATTTACG TGGTGATCTT GTTCGTAATC AATTAGTGTC AGCGTTAGAA TCAACGGAAT TTACGCTAAG TAATGAAGTT AAAGCGCAAG GTGAACTTGA AGGTCAGCAA CGTGAAATTC GTACCATTAC TTTAGATACA GCAACATTTG CTAAAAATGC AAAAGTGACT GAAGAAGAAG TAAAAGAATA CTATGATGCG AATAAACAAC AATTTGTTCG TCCAGAACAA GTTAAAGTTT CTTATATTGA ATTATCTGGT GAATCATTGA AGGCACAAGC GCCAATTACT GATGAAGAAA TTCAAACGTA TTACAATGAG AATCAAGATA AGTACTCAAC GCAAGAAAAA CGTGAAGTAA GCCATATTCT TATCAAAGGT GACGAAGCTG ACGCTCAAGC GGTTCTTGCT CGTTTAGATG CAGGTGAAGA TTTCGCTACT GTAGCGAAAG AAGACTCGCA AGATATTCCA ACAGCAAAAG AAGGTGGTTC TTTAGGTTGG ATTGAACGCG GTGTGATTGA TCCTGAATTT GAAGATGCCG CTTTCCAACT TGTTAATGTA GGCGATCATT CAGGCTTAGT TAAATCTGCA TTTGGTTATC ATATTATTCA ATTAGATGCG ATTGAAGCAC CAAAAACTAA GCCTTTGGCT AAAGTAAGTG CGGACATTAA AGCGTTTTTA GTTGATGAGC ACGCTGCAGA TGCTTTTTAT AGCATGCAGA CAGAATTAGC AGAAAAAGCA TTTGAATCTC CTGATTCACT AGATGATGCT GCTGAAGCCG TAAATGCAAA AGTAATTACT TCTGATTTCT TCTCTCAAGC GGATGCACCA GCATTGCTAG CAAATAGTGA TGTGCTTCAA GCTATTTATA GCGCAGAAGT AAAAGAAGAT GGCTTAAATT CTGATGTTAT TGAGATTGCT CCTGAACACG TAGTTGTTGT TCGTGTTGAA GAGTCTCGTG ATGAAATGGT ATTACCGTTA GAAGAGGTTA AAGCGTCTGT TATTACTCGC TTATCTCAAG CTAAAGGTGA GCAAAAAGCA TTAGAGTTAG CGAAGAATAT AATTACGGCG TTAAATAAAG ACGATGATGC ATATTTATCA GAGCAAGGCT TAGTATTTAC AGAAGCACGA ATGATTACTC GTGCAGATGA ACTTGCTAAC GATGTTTACC GTTTACAAAA ACCGACTGCT GATAAGCCTA CATACGCTCA AGTAATGGAT CGACAAGGTA ATAATGTCAT TGTTGCTTTG GATGACGTAC TAGAACTTGA TAATAGCGCA ATGGCTGAAC AAGTAAGTAC TCGTCTGCTT AGAACTCAGA CACAACAAGA TTTAACGGCG ACACTTGATA CGCTTAAATC TAATACTGAA ATTAGTTATC CATTATTAGA GCAATAA
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Protein sequence | MMDRIREGST GLVVKIILGL IIFSFVFAGV GSYLVGGSQP LAAKVGEREI TRNDFEQVYQ NERNRMQSQL GEYFSTLLGD PAYVEQFRKS VLDRMVNDAL LDNQAQELGL RVSDEQIRQA ILSMPQFQKD GKFDEEIFNV SLRRAGFTSD SFAEYLRGDL VRNQLVSALE STEFTLSNEV KAQGELEGQQ REIRTITLDT ATFAKNAKVT EEEVKEYYDA NKQQFVRPEQ VKVSYIELSG ESLKAQAPIT DEEIQTYYNE NQDKYSTQEK REVSHILIKG DEADAQAVLA RLDAGEDFAT VAKEDSQDIP TAKEGGSLGW IERGVIDPEF EDAAFQLVNV GDHSGLVKSA FGYHIIQLDA IEAPKTKPLA KVSADIKAFL VDEHAADAFY SMQTELAEKA FESPDSLDDA AEAVNAKVIT SDFFSQADAP ALLANSDVLQ AIYSAEVKED GLNSDVIEIA PEHVVVVRVE ESRDEMVLPL EEVKASVITR LSQAKGEQKA LELAKNIITA LNKDDDAYLS EQGLVFTEAR MITRADELAN DVYRLQKPTA DKPTYAQVMD RQGNNVIVAL DDVLELDNSA MAEQVSTRLL RTQTQQDLTA TLDTLKSNTE ISYPLLEQ
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