| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0588 |
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| Symbol | ompU |
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| ID | 6988386 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 649514 |
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| End bp | 650515 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643378973 |
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| Product | major outer membrane protein OmpU |
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| Protein accession | YP_002262108 |
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| Protein GI | 209694180 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0116995 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAGA ACGTATTGGC TCTTGCAGTA GCCGCTATTA TGTCAACTGG TGCAGTTAAC
GCAGCAGAGA TCTACAAAGG CGCAGACCAA ACTCTAGAAA TGGGCGGTCG TGCTGAAGCA
CGTCTATCTA TGAAAGATGG TAAAGCTGAA GATGCATCAC GTATCCGTTT AAACGTTAAA
GGCACAACTC AAATTTCTGA CGGTCTATAC GGTGTTGGTT TCTGGGAAGG TGAATTCACT
ACTGCTGAAA ATGGCGGTGT TGATGGGAAT TCAAATCTTG ATTCTCGTTA CGCATATGCA
GGAATGGGCG GTAACTTCGG TGAAGTAACT TACGGTAAAA ATGACGGTGC TCTAGGTGTT
ATCACTGATT TCACCGATAT CATGGCATAT GCTGGTAACA CAGCAGCAGC TAAAATTGCC
GTAGCTGACC GTACAGATAA CAACTTAGGC TACAAAGGTA CATTTGGTGA TTTCTCAGCT
AAAGCTAACT ACCGCTTTGC TGACCGTACT GAAAATCTAG CTGGAACTGA GTATAAAGAT
AATGGCCAAG ATGGATACGC ATTATCAGGT ATCTACGCAT TCGGTGATTC TGGTTTCAAA
CTAGGTGCTG GTTACGCGGA TCAAGCAGAA CAAAATGAAG TTATGCTTGC TGGTTCTTAT
ACTATGGACA ACCTATACTT TGCTGGTACA TTCACAAACG GTGAATTAGC AGAGAAAAAC
GCTGACTACA CAGGCTACGA AGCAGCTGTA GCTTATACTA TGGGTAAAAC CGTATTTACT
TCTACGTATA ACAACGCTGA AACAAATGAC GAAACATCTG CTGATAACTT TGCTGTTGAT
GCAACATACT TCTTCAACGC TAACTTCCGT ACGTACATTT CTTACAACTT CAACCTAATC
AGTGAAGGTG ATAAATTAGG TACTGCTGGC GTATCAAATG CTAAAGCTTC TGATGTAGAT
GCAGAAAACG AGCTAGCTCT AGGTATGCGT TACGACTTCT AA
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| Protein sequence | MNKNVLALAV AAIMSTGAVN AAEIYKGADQ TLEMGGRAEA RLSMKDGKAE DASRIRLNVK
GTTQISDGLY GVGFWEGEFT TAENGGVDGN SNLDSRYAYA GMGGNFGEVT YGKNDGALGV
ITDFTDIMAY AGNTAAAKIA VADRTDNNLG YKGTFGDFSA KANYRFADRT ENLAGTEYKD
NGQDGYALSG IYAFGDSGFK LGAGYADQAE QNEVMLAGSY TMDNLYFAGT FTNGELAEKN
ADYTGYEAAV AYTMGKTVFT STYNNAETND ETSADNFAVD ATYFFNANFR TYISYNFNLI
SEGDKLGTAG VSNAKASDVD AENELALGMR YDF
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