Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2504 |
Symbol | gyrB |
ID | 5136439 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 2655807 |
End bp | 2658224 |
Gene Length | 2418 bp |
Protein Length | 805 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640533955 |
Product | DNA gyrase subunit B |
Protein accession | YP_001218397 |
Protein GI | 147673680 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.892795 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGAACA ATTACGATTC ATCGAGTATT AAGGTACTGA AGGGTCTGGA TGCGGTACGC AAGCGTCCGG GTATGTACAT CGGCGACACT GATGATGGCA CCGGTCTGCA CCACATGGTT TTTGAGGTGG TGGATAACTC AATTGATGAA GCGTTGGCAG GTTACTGTAA AGACATCGTG GTCACCATCC ACGAAGACAA CTCAGTGTCA GTCAGCGATG ACGGTCGTGG TATCCCGACC GAAATGCATC CTGAAGAGAA AGTGTCTGCG GCAGAAGTCA TCATGACTGT ACTGCACGCC GGCGGTAAAT TTGACGACAA CTCCTATAAA GTCTCCGGTG GTCTGCACGG GGTAGGTGTG TCGGTGGTTA ACGCGCTTTC TGAAAAAGTG CTGCTTACCA TTTATCGTGG TGGCAAGATC CATTCGCAAA CTTACCATCA TGGTGTGCCA CAAGCACCGT TGGCTGTGGT AGGTGAGACA GAGCGTACCG GTACTACCGT ACGTTTCTGG CCTAGTGCAC AGACTTTTAC CAATATCGAA TTCCATTACG ACATTTTGGC TAAACGCCTG CGTGAGCTGT CATTCCTGAA CTCTGGCGTG TCGATCAAGC TGACCGATGA ACGTGAAGAA GATAAAAAAG ACCACTTCAT GTATGAAGGG GGTATTCAAG CGTTTGTGAC CCACTTGAAC CGTAACAAAA CGCCAATCCA TGAGAAAGTC TTCCACTTTA ACCAAGAGCG TGAAGATGGC ATCAGCGTGG AAGTGGCAAT GCAGTGGAAC GATGGTTTCC AAGAAAACAT CTACTGCTTT ACTAACAACA TCCCACAGCG TGATGGTGGT ACCCACTTAG CCGGTTTCCG TGGTGCGTTG ACCCGTACTT TGAACAACTA CATGGACAAA GAAGGCTTCT CGAAGAAAGC GCAAGCGGCA ACCTCGGGTG ATGATGCGCG TGAAGGCTTA ACGGCAGTGG TTTCGGTGAA AGTGCCGGAT CCTAAATTCT CAAGCCAAAC CAAAGATAAG CTGGTTTCTT CGGAAGTAAA ATCCGCGGTT GAGTCAGCCA TGAATGAGAA GCTGGCGGAT TTCCTAGCGG AAAACCCAAG CGAAGCGAAA AACGTTTGTT CGAAGATTAT TGATGCGGCG CGTGCGCGTG AAGCGGCGCG TAAAGCCCGG GAAATGACTC GCCGTAAAGG CGCGCTGGAT CTTGCTGGCT TACCCGGCAA ACTGGCGGAT TGTCAGGAAA AAGACCCAGC ATTGTCTGAA CTCTACATAG TGGAGGGTGA CTCAGCGGGC GGTTCAGCCA AACAAGGCCG TAACCGTAAG AATCAAGCGA TTCTGCCGCT GAAAGGTAAA ATCCTCAACG TAGAAAAAGC GCGTTTTGAC AAGATGTTGT CTTCACAAGA AGTCGCGACC CTCATCACTG CATTAGGCTG TGGTATCGGC CGTGATGAGT ACAACCCAGA TAAACTGCGT TATCACAACA TCATCATCAT GACCGATGCG GACGTCGACG GCTCGCACAT TCGTACTCTG CTGTTGACCT TTTTCTACCG CCAAATGCCT GAGTTGATTG AGCGTGGTTA CATCTACATT GCTCAGCCAC CACTGTATAA AGTGAAGAAA GGCAAACAAG AGCAGTACAT CAAAGATGAA GAGGCGATGA ACCAGTACCA AGTGGCACTG GCGATGGATG GTGCAGAGCT GCACGTGAAT GCCGATGCGC CAGCGTTAGC GGGTGAACCG CTGGAGAAGC TGGTTCAGCA ATATAACGCC GCGATCAAGC TGGTTGAGCG CATGAGCCGC CGTTACCCTT ACGCGATGCT GCATGAGCTG ATTTACGTAC CACGCATCAA TGCCGAGCTG TGTGCGGATA AAGCCGCGGT TGAAGCTTGG ACACAGCGTT TAGTCGAACA GTTGAATGCT AAAGAAGTGG GTGCGAGCCA ATACAGCGTT CTGGTTGAAC ACAATGCTGA GCTGAATGTG TACTTGCCAA AAATTCAGGT GCGTACTCAC GGTGTGACTC ATGAATACTT ACTGAGCGCG GATCTGATCA ACTCGAAAGA GTACGCTAAG TTAGCCGATC TGTCGGAAGC GCTGGACGGT TTGATTGAAG CGGGAGCGTT TATCAAACGT GGTGAGCGAG TACAACCGAT CAGCAGCTTT GCCGCCGCGC TGGATTGGCT GATCAAAGAG TCGCGCCGCG GTCTGTCTAT CCAACGCTAT AAAGGTCTGG GCGAAATGAA CCCTGATCAG CTGTGGGAAA CTACGATGGA TCCAGAAACG CGTCGTATGA TGCAAGTCAC TATCGAAGAT GCGGTAGGCG CGGACGAACT GTTCACGACG CTCATGGGCG ATCAAGTTGA ACCACGTCGT GCATTTATCG AAACCAACGC ACTGAAAGTG GCCAACCTCG ACGTATAA
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Protein sequence | MSNNYDSSSI KVLKGLDAVR KRPGMYIGDT DDGTGLHHMV FEVVDNSIDE ALAGYCKDIV VTIHEDNSVS VSDDGRGIPT EMHPEEKVSA AEVIMTVLHA GGKFDDNSYK VSGGLHGVGV SVVNALSEKV LLTIYRGGKI HSQTYHHGVP QAPLAVVGET ERTGTTVRFW PSAQTFTNIE FHYDILAKRL RELSFLNSGV SIKLTDEREE DKKDHFMYEG GIQAFVTHLN RNKTPIHEKV FHFNQEREDG ISVEVAMQWN DGFQENIYCF TNNIPQRDGG THLAGFRGAL TRTLNNYMDK EGFSKKAQAA TSGDDAREGL TAVVSVKVPD PKFSSQTKDK LVSSEVKSAV ESAMNEKLAD FLAENPSEAK NVCSKIIDAA RAREAARKAR EMTRRKGALD LAGLPGKLAD CQEKDPALSE LYIVEGDSAG GSAKQGRNRK NQAILPLKGK ILNVEKARFD KMLSSQEVAT LITALGCGIG RDEYNPDKLR YHNIIIMTDA DVDGSHIRTL LLTFFYRQMP ELIERGYIYI AQPPLYKVKK GKQEQYIKDE EAMNQYQVAL AMDGAELHVN ADAPALAGEP LEKLVQQYNA AIKLVERMSR RYPYAMLHEL IYVPRINAEL CADKAAVEAW TQRLVEQLNA KEVGASQYSV LVEHNAELNV YLPKIQVRTH GVTHEYLLSA DLINSKEYAK LADLSEALDG LIEAGAFIKR GERVQPISSF AAALDWLIKE SRRGLSIQRY KGLGEMNPDQ LWETTMDPET RRMMQVTIED AVGADELFTT LMGDQVEPRR AFIETNALKV ANLDV
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