| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2108 |
|---|
| Symbol | |
|---|
| ID | 5137759 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 2264297 |
|---|
| End bp | 2265022 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640533564 |
|---|
| Product | ABC transporter, ATP-binding protein |
|---|
| Protein accession | YP_001218024 |
|---|
| Protein GI | 147674741 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1137] ABC-type (unclassified) transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 51 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATCT TAAAAGCACA GCATTTAGCC AAGAGCTACA AAAAGCGCAA AGTGGTTTCT
GACGTCAGTC TTCAAGTTGA GTCAGGACAG ATTGTGGGCC TGCTTGGCCC TAATGGTGCG
GGTAAAACCA CCTCGTTTTA CATGATTGTC GGCCTTGTCG CGCGTGATGA AGGCACCATT
ACCATCGATG ACAACGACAT CAGCATTCTA CCGATGCACA GCCGCTCACG GATGGGCATT
GGTTATCTGC CGCAAGAAGC GTCTATCTTT CGCAAACTCT CGGTCGAAGA CAACATCATG
GCCGTCCTGC AGACCCGCGA AGAGCTGACC CATGAAGAGC GTCAGGACAA GCTGGAAGAT
TTGCTCGAAG AATTCCACAT TCAGCACATT CGTAAAAGTG CTGGGATGGC GCTCTCTGGC
GGTGAACGAC GCCGGGTGGA AATCGCCCGC GCTCTGGCGG CTAACCCACA ATTTATCTTG
CTGGATGAGC CTTTTGCTGG CGTTGACCCC ATCTCGGTCA TCGATATCAA AAAAATCATC
GAACATCTGC GCGATCGCGG TCTAGGGGTC CTCATCACCG ACCACAACGT ACGTGAAACG
CTGGATGTGT GTGAAAAAGC GTATATTGTC AGCCAAGGCC GACTGATTGC GGAAGGAACG
CCACAAGATG TTCTCAATAA TGAACAGGTG AAGCAGGTTT ATCTCGGCGA ACAATTCCGT
CTATGA
|
|---|
| Protein sequence | MAILKAQHLA KSYKKRKVVS DVSLQVESGQ IVGLLGPNGA GKTTSFYMIV GLVARDEGTI
TIDDNDISIL PMHSRSRMGI GYLPQEASIF RKLSVEDNIM AVLQTREELT HEERQDKLED
LLEEFHIQHI RKSAGMALSG GERRRVEIAR ALAANPQFIL LDEPFAGVDP ISVIDIKKII
EHLRDRGLGV LITDHNVRET LDVCEKAYIV SQGRLIAEGT PQDVLNNEQV KQVYLGEQFR
L
|
|---|
| |