Gene Tmel_0541 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_0541 
Symbol 
ID5298039 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand
Start bp576956 
End bp577987 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content31% 
IMG OID640768802 
ProductApbE family lipoprotein 
Protein accessionYP_001305793 
Protein GI150020439 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAATAAAC TATCAAAAAT TTCACTAGCT TCTACTATTT TATTAATTTC AATGATTATT 
ATAGTTTTAG TTGTAGTAGT ATTTTTTAAG AAAACATCCA GGTATGAAAC TTTTGAAACT
TTTTCGCTTG GAACTTATGT ACAACTAAGA ATATCTACAA AAGCCAACGC CTCAATTATT
GCTAGGGAAA TATTCCAAGA ATTTGATAGA ATTACAAAAA AATTTAATCC TTATAACCCT
GAATCGGTTA TTTACAAGTT AAATAATAGC ACTGATTGGG TAGAAGTTGA TGACGAAACA
TTCGCAGTTA TAGATTTGTC TTTACAGTAT GCAAAAATGA CTAGAGGTTC TTTTGACCCA
ACTCTTGGAA GACTTATCAA ACTTTGGGGA TTTGATAAAT TTTCAGAAGA AGATAAACAA
TTTAAAGTTC CAAATAACGA AGAAATAAAA AATGCTTTGG AAAATTCTGG CTTTGAAAAG
GTAGAGATAG ATTACAAAAA CAGAAAGATA AAAACCAATG GCGTTTGGTT TGACTTAGGT
GGAATAGCAA AGGGTTATGC ACTTGAAAGA GCTTATCAAA TTGCTAAAGA AGCTGATAGA
GAGTGCACAG GTTTTATTGA AGCAGGCGGA GATATAAGGA TTTTAGGCCC AAAATTTGGA
AAAGACTATT GGATTATAGG TATTAGAAAT CCTAGAGGAA ATGACAGTAT AGACTATATA
TATTTAAAAA ATGGGGCAGT TGCAACTAGT GGAGATTATG AAAGATATTT TGAAATAGGC
GAAAAAAGAT ATCACCATTT ACTTGATAGA AATACAGGTT ATCCTGCATT AGGAGCTATA
AGTGCAACAG TTATTGCAGA TGACGCAATA AAAGCTGATG CTTTTTCTAC AGCCGCTTTT
ATTTTAGGAA AGGATAAATG GCTGTACACA CGAACTATAT TACCCAAAGA AAATGCAGAA
ATATTTTTAG TTACAAATGA ACAAAAAATT TTAAAAACAG ACGGATTTGA ATATTATGAA
AATACATATT AA
 
Protein sequence
MNKLSKISLA STILLISMII IVLVVVVFFK KTSRYETFET FSLGTYVQLR ISTKANASII 
AREIFQEFDR ITKKFNPYNP ESVIYKLNNS TDWVEVDDET FAVIDLSLQY AKMTRGSFDP
TLGRLIKLWG FDKFSEEDKQ FKVPNNEEIK NALENSGFEK VEIDYKNRKI KTNGVWFDLG
GIAKGYALER AYQIAKEADR ECTGFIEAGG DIRILGPKFG KDYWIIGIRN PRGNDSIDYI
YLKNGAVATS GDYERYFEIG EKRYHHLLDR NTGYPALGAI SATVIADDAI KADAFSTAAF
ILGKDKWLYT RTILPKENAE IFLVTNEQKI LKTDGFEYYE NTY