Gene Tfu_2646 details

Gene Information

• Locus tag: Tfu_2646
• Symbol: rplC
• ID: 3581462
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermobifida fusca YX
• Kingdom: Bacteria
• Replicon accession: NC_007333
• Strand: -
• Start bp: 3107943
• End bp: 3108593
• Gene Length: 651 bp
• Protein Length: 216 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 637686365
• Product: 50S ribosomal protein L3
• Protein accession: YP_290702
• Protein GI: 72163045
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 0.334348
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGACCA AGCAGATCAA GGGAGTCCTG GGCGAAAAGC TCGGCATGAC CCAGGTCTTC 
GACGAGTCCG GCAAAGTTGT GCCTGTGACG GTGTTGAAGG CCGGCCCAGC TGTCGTGACT 
CGCGTCCGTA CCCCGGAGAC CGATGGGTAC TCCGCGATTC AGCTCGGCTA CGGCCACATC 
AACCCGCGCA AGGTGAACAA GCCGCTCGGC GATTACCTGC GTAAGCACAA CCTCACCCCT 
CGCCGCCACT ACGTCGAGGT GCGCACCTCC GACGCCAGCG AGTACACGGT CGGTCAGGAG 
ATCACCGCTG ACGTGTTCCA GCCTGGTGAA AAGGTTGACG TCACCGGAAA GACGAAAGGC 
AAGGGGTACG CCGGTGTCAT GAAGCGCCAC GGCTTCGGCG GCCTCGGCGC CTCGCACGGC 
ACCCAGCGCA AGCACCGTTC TCCTGGTTCC ATTGGTGGCT GCGCCACCCC AGGCCGTGTT 
TTCAAGGGAA TGCGCATGGC CGGCCGCATG GGCAACGTGC GCCGCACCGT GCAGAACCTC 
ACCGTGCACT CAGTTGACGC CGAGAAGGGC CTCCTTCTGG TCAAGGGTGC GGTTCCCGGT 
CCCAACGGTG GCCTGGTTCT CGTCCGCACC GCCGTGAAGG GGGGCAAGTA A 

 

Protein sequence

MTTKQIKGVL GEKLGMTQVF DESGKVVPVT VLKAGPAVVT RVRTPETDGY SAIQLGYGHI 
NPRKVNKPLG DYLRKHNLTP RRHYVEVRTS DASEYTVGQE ITADVFQPGE KVDVTGKTKG 
KGYAGVMKRH GFGGLGASHG TQRKHRSPGS IGGCATPGRV FKGMRMAGRM GNVRRTVQNL 
TVHSVDAEKG LLLVKGAVPG PNGGLVLVRT AVKGGK