| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_2474 |
|---|
| Symbol | sdhA |
|---|
| ID | 4245243 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | - |
|---|
| Start bp | 3805467 |
|---|
| End bp | 3807194 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638107557 |
|---|
| Product | succinate dehydrogenase flavoprotein subunit |
|---|
| Protein accession | YP_722156 |
|---|
| Protein GI | 113476095 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000557801 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGAAC ATGATATAAT TATAGTTGGT GGCGGTCTTG CTGGCTGTCG CGCTGCTGTA
GAAATAGCTC GAAAAAATCC TAGTTTAAAT GTGGCAGTAG TTGCCAAAAC TCACCCTATT
CGTTCCCACT CTGTGGCTGC TCAAGGGGGG ATAGCGGCGT CTCTGAGAAA TGTAGATACT
AAAGATAGCT GGGAAGCTCA TGCTTTTGAT ACTGTTAAGG GTTCGGACTA TTTAGCAGAC
CAAGACGCAG TAGAAATTTT AGCGAAGGAG GCACCAGATG TAATTATTGA CTTGGAACAT
CTAGGAGTGT TATTCTCCCG GTTGCCAGAT GGTCGCATCG CTCAACGTGC TTTCGGCGGT
CACTCTCACA ACCGTACCTG TTATGCTGCG GATAAAACTG GTCATGCTAT TCTTCATGAG
TTAGTTAATA ACCTTCGCCG TTATGGAGTA CATATTTATG AGGAATGGTA TGTAATGCGC
CTGATATTGG AAGATACTCA GGCGAAGGGT GTAGTTATGT ATCATATTTG GGATGGGGAC
ATAGTTGTAC TTCGGGCTAA GGTGGTAATG TTTGCTACTG GTGGTTATGG TCGGGTATTT
AATACTACTT CTAATGATTA TGCTTCGACT GGGGATGGTT TGGCAATGGC GGCTATGGCT
GGGTTGCCTC TTCAAGATAT GGAGTTTGTG CAGTTTCATC CTACTGGGTT ATATCCAGCA
GGGGTTTTAA TTTCGGAGGC AGTGCGGGGT GAGGGTGCTT ATCTGATCAA TAGCGAGGGC
GATCGCTTTA TGGCAAATTA TGCTCCTAGT CGTATGGAGT TGGCACCTCG TGATATTACT
TCCCGTGCTA TTACTTTGGA AATTCGCGCT GGTCGGGGAA TTAATATGAA TGGTAGTGCG
GGCGGTCCGT TTATTTATCT TGACCTGCGA CACATGGGTC GGGAGAAAAT TATGAGTCGG
GTACCTTTTT GTTGGGAAGA GGGTCATCGT CTTTTAGGTA TTGATGCGGT GAATGAACCG
ATGCCAGTAC GCCCGACTGC TCATTATTCT ATGGGTGGTA TTCCTACTAA TACTGATGGT
AGAGTTTTCG CGAGTGCGGA TACTTTGGTG GATGGGTTAT TTGCTGCGGG AGAATGTGCT
TGTGTTTCGG TACATGGGGC TAACCGTTTG GGAAGTAATT CTTTGTTGGA ATGTGTGGTT
TATGGACGAC GGACTGGAGC GGCGATCGCT GAGTTTGTTG AGGGTCGGAA GTTGCCTGAT
GTTGAGGAAC AGCGTTATTT AAGGGAGGCG CGGGCACAAG TTCAGGGGTT GTTAGACCGC
TCTGGAGAAT ATCGGATTAA TTTTTTACAG CAGCAGTTTC AGGATACCAT GAGTCAACAT
TGTGGTGTGT TTCGTTCCCA GGCTATAATG GAGGAGGGGT TTAAAAAATT GGAGCAGTTA
CAGGAACAAT ATCAGCAGGT TTATTTGGAT GATAAGGGTA AGTTGTGGAA TACGGAAATT
GTTGAGGCGC TGGAGTTGCG GAGTATTATT GTTGTGGGGG AGACAATTTT AAGTTCGGCT
TTGAGTCGCC AGGAAAGTCG GGGGGCTCAT AGTCGGGAAG ATTTTACTAA GCGAAATGAT
GAGGAGTTTT TACGGCATAC TTTGGCTTAT TATTCGTTGG CGGGTATTGA TATCAGTTAT
CGACCTGTGG CAATAACTAT GTTTGAACCA AAGGAACGGA AGTATTGA
|
|---|
| Protein sequence | MLEHDIIIVG GGLAGCRAAV EIARKNPSLN VAVVAKTHPI RSHSVAAQGG IAASLRNVDT
KDSWEAHAFD TVKGSDYLAD QDAVEILAKE APDVIIDLEH LGVLFSRLPD GRIAQRAFGG
HSHNRTCYAA DKTGHAILHE LVNNLRRYGV HIYEEWYVMR LILEDTQAKG VVMYHIWDGD
IVVLRAKVVM FATGGYGRVF NTTSNDYAST GDGLAMAAMA GLPLQDMEFV QFHPTGLYPA
GVLISEAVRG EGAYLINSEG DRFMANYAPS RMELAPRDIT SRAITLEIRA GRGINMNGSA
GGPFIYLDLR HMGREKIMSR VPFCWEEGHR LLGIDAVNEP MPVRPTAHYS MGGIPTNTDG
RVFASADTLV DGLFAAGECA CVSVHGANRL GSNSLLECVV YGRRTGAAIA EFVEGRKLPD
VEEQRYLREA RAQVQGLLDR SGEYRINFLQ QQFQDTMSQH CGVFRSQAIM EEGFKKLEQL
QEQYQQVYLD DKGKLWNTEI VEALELRSII VVGETILSSA LSRQESRGAH SREDFTKRND
EEFLRHTLAY YSLAGIDISY RPVAITMFEP KERKY
|
|---|
| |