| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0701 |
|---|
| Symbol | |
|---|
| ID | 3672672 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | - |
|---|
| Start bp | 742011 |
|---|
| End bp | 743807 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637709379 |
|---|
| Product | excinuclease ABC subunit C |
|---|
| Protein accession | YP_314459 |
|---|
| Protein GI | 74316719 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0322] Nuclease subunit of the excinuclease complex |
|---|
| TIGRFAM ID | [TIGR00194] excinuclease ABC, C subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.233077 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGTCG ACAAGGAATT TCTCGCCTCG CTGCCCACCC TTCCGGGTGT TTATCGCATG
GTCGACGCGG CCGGCGCGGT GCTCTATGTC GGCAAGGCGA AAGATCTGCG CAAACGCGTC
GGCAGCTATT TCCTCAAGAC CGACCAAAGT CCGCGCATCC GGCTGATGCT GAAGAGCGTC
GATCACATCG ACACGACGGT GACGCGCACC GAGGCCGAAG CGCTGCTGCT CGAGAACAAC
CTGATCAAGG GCCTCAAGCC GCGGTTCAAC ATCCTGTTCC GCGACGACAA GTCCTACCCC
TACCTGCTGC TGACCGGCCA CGGCTACCCG CGCCTGGCGT ATTTTCGCGG CGCGCCGAAG
AAACGCGACC AGGCCTTCGG CCCCTACCCC AATTCCTACG CGGTGCGCGA GAGCATCCAG
CTCCTGCAGA AGGTGTTCCA GTTGCGCACC TGCGAAGACA CGGTGTTCGG CAACCGCTCG
CGCCCCTGTC TGCTGCATCA GATCAAGCGC TGCAGCGCGC CCTGCGTCAG CCTCGTCAGC
GCGGAGACCT ACGCGCGCGA CGTCGCCGAG GCCATGCTGC TGCTCAAGGG CGAAGCGACG
GCGCTGACCG AGGAAATCAC GGCGCAGATG AACGCCGCGG CGGAAAACCT CGACTTCGAG
ACCGCAGCCT ATCTGCGTGA CCGGCTGCGC ATGCTCGCGA CCGTGCGCGA AAAGCAGTTC
GTCGACACCA CCGGCAGCGA GGCCGACGCC GACGTCGTCG CCGTCGCCGA GGTCGGCGGC
GTCATCGCGG TCAACCTGAC CATGATCCGC GGCGGCCGCC ATCTCGGCGA CCGCAGCTTC
TTTCCGCAAC ACGGCGAAGG GGCGGCGCTC GGCGAAGCGC TCGAAGCCTT CGTCGCGCAG
CACTACCTCG ATCACCCGAT CCCGGCGCGC ATCCTGGTCA GCGAGGCGAT CGACAGCGCC
GCGCTGCAGA CGCTGCTGAG CGAACAGGCC GGCAAGAAGG TCACGCTGCA GCATCGCGTC
ACCGGCGAGC GTCGCGTCTG GATCGCGATG GCGCAGGCCA ACGCGCGACT CTCGGCCGAG
CGCCGCAGCG CGGACCGCGC CAACCAGTCG CAGCGCCTCG CCGCGCTGCG CGATACGCTC
GAACTGCCGA CGCTCAACCG TATCGAATGC TTCGACATTT CACACACCAT GGGTGAGGCG
ACGATCGCAT CCTGCGTCGT CTACGAAGGC GACGACCTCA AGAAATCGGA CTACCGCCGC
TACAACATCG AGGGCATCAC GCCGGGCGAC GACTACGCCG CGATGCACGC CGCGCTGATC
AAGCGCTTCC ACCGCACGGT CGAGGAAAAC GGCGTGCTGC CCGACCTGCT GCTGATCGAC
GGCGGCAAAG GGCAGGTCGC GATGGCGGTC GAGGCCTTAG CCGAGCTCGG CATCGACGAC
GTCCTGCTAC TCGGCGTCGC CAAGGGCGAA AGCCGCAAGC CGGGCCTCGA GACGCTGATC
TTCGCCGACG GCCGCGAACT GAAGCTTGCC CGCGATCATC CCGGTTTCCA CCTGATTCAG
CAGGTACGCG ACGAGGCGCA CCGGTTCGCG ATCACGGGCC ACCGGGCCAA GCGCGGCAAG
GCGCGCGTGC AGTCGACGCT CGAGGACATC GCCGGCATCG GGCCGAAGCG CCGCAAGCAG
CTGCTCGAAC ACTTCGGCGG GCTGCAGGGC GTGCGCAACG CGGGCGTGGA CGCCCTTGCC
TCGGTCAACG GTATCAGCCG AGAATTGGCG GAAATCATCT ATAACGCGCT CCATTGA
|
|---|
| Protein sequence | MSVDKEFLAS LPTLPGVYRM VDAAGAVLYV GKAKDLRKRV GSYFLKTDQS PRIRLMLKSV
DHIDTTVTRT EAEALLLENN LIKGLKPRFN ILFRDDKSYP YLLLTGHGYP RLAYFRGAPK
KRDQAFGPYP NSYAVRESIQ LLQKVFQLRT CEDTVFGNRS RPCLLHQIKR CSAPCVSLVS
AETYARDVAE AMLLLKGEAT ALTEEITAQM NAAAENLDFE TAAYLRDRLR MLATVREKQF
VDTTGSEADA DVVAVAEVGG VIAVNLTMIR GGRHLGDRSF FPQHGEGAAL GEALEAFVAQ
HYLDHPIPAR ILVSEAIDSA ALQTLLSEQA GKKVTLQHRV TGERRVWIAM AQANARLSAE
RRSADRANQS QRLAALRDTL ELPTLNRIEC FDISHTMGEA TIASCVVYEG DDLKKSDYRR
YNIEGITPGD DYAAMHAALI KRFHRTVEEN GVLPDLLLID GGKGQVAMAV EALAELGIDD
VLLLGVAKGE SRKPGLETLI FADGRELKLA RDHPGFHLIQ QVRDEAHRFA ITGHRAKRGK
ARVQSTLEDI AGIGPKRRKQ LLEHFGGLQG VRNAGVDALA SVNGISRELA EIIYNALH
|
|---|
| |