| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0013 |
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| Symbol | |
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| ID | 3673848 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 13054 |
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| End bp | 14265 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637708672 |
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| Product | peptidoglycan-binding LysM-like protein |
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| Protein accession | YP_313771 |
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| Protein GI | 74316031 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.154454 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGGGTT CCCCAGTGCG CCGACTCGTT GTTTCCCTTG CCCTGCTGTT TGCCGCGACG
CCCGTGCTGG CCGACACCCT CAAGCTGCAG GACAACGCTC CCGACCGATA CGTCGTCGTC
AAAGGCGACA CCCTGTGGGA CATCTCCGCG AAGTTCCTGA AGGATCCGTG GCGCTGGCCG
CAGATCTGGA ACATGAATCG CGCCGACATC AAGAATCCGC ACCGCATCTA CCCCGGCGAC
CTGATCGTGC TCGACCGCAG CGGCAAGTCG CCGCGCCTCG CCCTGGTCAA GGGCGGGCAA
GGCGGGATGC CGACGGTCAA GCTCTCGCCG GTCGCGCGCG CAAGCGAAAT CGACGATGCC
GCGATCCCGG CGATTCCGAT CCGCGTCATC CACCCCTTCC TGTCGCAGCC GCGCGTCGTG
CCCGAGGGCG CGTTCGACGG CGCGCCGTTC ATCCTCGGCA GCAACGCCGA GCGCGTCGTG
CTCGCGAGCG GGGACGAGGC CTTCGCGACG GGCGGCAAGA CCGGGGTGAC GCAATGGAAC
GTGCTGCGTC CCGGCAAGGC GCTCAAGGAC CCGGAGACCG GCGAAATCCT CGGCCACGAA
GTCGAGTATC TCGGCGACGC GCGCACCGTC GTCCCGGGCG CGCCGCAGAA GATCCACATC
ACTCGCTCGG CGCAGGAGAT CCTGCCGCGC GACAAACTCG TCGAGGCCGA CAACAGCACG
ACCTTCGAAT ACGTTCCGCG CGCGCCGGAA ACGGCGATCA GCGGCCGCAT CATCTCGGCC
TACGGCGGCC TCTCGGACAG CGGCCGCTAC CAGACCGTGG TCATCAACCG CGGCACGCGC
GACGGCCTCG AGCCCGGCCA CGTGCTCGCG GTCTACCGCG AAGGCCAGGC GGTCACGCTG
ACCCGCGACG AGAAGGACCG CATGACCTGG GTCAACGAAA AGGCCGGGGG CGTCCCCGAC
GGCGGCGCCT GGCTCTACAA CGACGTGCGC TGCCTGAAGG AAAACAGCAA GGTCACCTAC
GATCAGGTCG CCGACGCGCG CAACACCTTC CGCAGCACCT GCCTCGGCAG CACCGGCGAT
CGCACGGTCA AGCTGCCGGA CGCGCGCAGC GGGCTGCTGA TGGTCTACCG CGTCTACGAT
CGCGTCGCCT ACGCGCTGAT CCTGCAGTCG GAAGGCCCGG TCTACCTGCT CGACACGGTG
AAGACCCCCT GA
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| Protein sequence | MEGSPVRRLV VSLALLFAAT PVLADTLKLQ DNAPDRYVVV KGDTLWDISA KFLKDPWRWP
QIWNMNRADI KNPHRIYPGD LIVLDRSGKS PRLALVKGGQ GGMPTVKLSP VARASEIDDA
AIPAIPIRVI HPFLSQPRVV PEGAFDGAPF ILGSNAERVV LASGDEAFAT GGKTGVTQWN
VLRPGKALKD PETGEILGHE VEYLGDARTV VPGAPQKIHI TRSAQEILPR DKLVEADNST
TFEYVPRAPE TAISGRIISA YGGLSDSGRY QTVVINRGTR DGLEPGHVLA VYREGQAVTL
TRDEKDRMTW VNEKAGGVPD GGAWLYNDVR CLKENSKVTY DQVADARNTF RSTCLGSTGD
RTVKLPDARS GLLMVYRVYD RVAYALILQS EGPVYLLDTV KTP
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