| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3851 |
|---|
| Symbol | |
|---|
| ID | 4074914 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008042 |
|---|
| Strand | + |
|---|
| Start bp | 103394 |
|---|
| End bp | 103981 |
|---|
| Gene Length | 588 bp |
|---|
| Protein Length | 195 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638004508 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_611243 |
|---|
| Protein GI | 99077984 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 54 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.855967 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGATAATT ATTCAAGATT CATCGCATAC TTGAAAGTTC TACTCCCAAC TGCGGCATTA
GGATTGTTTT CAACGGTTTT TTTTCTTTGG AGCCCCAAGT TCAACGAAGA TAACGCAATA
CCTTATACAC ATGATGAGAT CATACGTCGG ATAAATCATC GTCAAGCCAC CACCCCTCTC
TACTTATCAA CTACGGCCAA AGGCCACAAT GTGCGTATCA ATGCTGACCA TACGTATCTA
GGAGAAGAGC TCAGCCTACC TATTGCTGAA GAAGTGACCG GTCAACTTGA CTTTATCGAT
GGAAGTATAG TGACGCTTTC CGCGGATAGA GCGGTTTTTG AAGAGCATAG TGATTTGGTA
AATTTCTCAG GGAATGTCGT CTTGAATTCC ACTGAAGGAA TTACCCTAGA ATCTGACCAG
CTCACAACCA ATATTGTCGC TCTCACTGCG TATAGTGATG TTCCAGTAAG AGCAAGCAGT
GCCCTTGGAG AACTGAGGTC TGGCAATATG CGGATAACAA CAATTCATAA TAGCGGTCAC
TTGAAAATGT TTTTTGGGAA TGGTGTCAAG CTGACCTATG TTCCCTAA
|
|---|
| Protein sequence | MDNYSRFIAY LKVLLPTAAL GLFSTVFFLW SPKFNEDNAI PYTHDEIIRR INHRQATTPL
YLSTTAKGHN VRINADHTYL GEELSLPIAE EVTGQLDFID GSIVTLSADR AVFEEHSDLV
NFSGNVVLNS TEGITLESDQ LTTNIVALTA YSDVPVRASS ALGELRSGNM RITTIHNSGH
LKMFFGNGVK LTYVP
|
|---|
| |