Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3840 |
Symbol | |
ID | 4074903 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008042 |
Strand | - |
Start bp | 86070 |
End bp | 89351 |
Gene Length | 3282 bp |
Protein Length | 1093 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 638004497 |
Product | hemolysin-type calcium-binding region |
Protein accession | YP_611232 |
Protein GI | 99077973 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0668693 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCCTTTT GGGAAGGGCA GCTATCTTCC GGCGCGGTGA GTGCCGCTGA TGCGATTGAT GCAATTATCA AGGGCGCGAC AACTGCGCCT GATTCAACAA TTCTTACCAA TAAAAATGCT GTTGGCTTGG ATTTTGCGAC GGACGCAGGT AACACACCTG GCTTCACCTT CGATTTGAAT GGTGCGTCTG GCAGTGCGGC CAAGAACGCT CTAGCTGGCG TAACCGACGA CGCTGCAACT GTTACCGCTG CTCAAGCCGC GACAGATGCA TATCTTAGCG GTGTTGCCGG CGCTGGTGAT ACACTCTCGC TCACCACGGG CGTGGACAAC ATTACTGGGA CTGTCAATCA AGACACGATT AAGGCTGTTG TGGGCGCCGG CGCCACTCTC TCTGCTGCTG ACGTCGTTGA TGGCGGGGCT GGCACCGACA CGCTTGAGCT AGTTGATGCG ACCGGTGGGC AATCCTTGGC AGCTGCGCTT CTCAATGTAA GCAACGTAGA AGAGTTGTCT ATTCGGAGCG TGGGGCAAGC CAAGGCGGAT ACATCCGGAA CGGCCTTCAC TAGTGTAAAT ATCACACAAG CAACGTCCGT TGATGCTGAT GTGAACGCTG CAACAAACGT AGGCGTATCT GGCGTAACTG GCGCAATTGC GGTTGATGGC GGTAAAGACA TCACCATCAC CGACGCTAAC GATGGGGCAA ATATCACAGT CGGTGGTGCG ACTGCTGTTA CTGGCGCCGT TACGGTTACA GACACTAAAG TTGGCAACGC AGCGATCGAA GTTAACGGTG GGACAACCGT TACGGTCAAT GCAACCGGCT CATCTGCTAA CAACATTAAA GTCGGTGGTG CGACCACAAC CGATCAGCCC TCTGGTGCTG TTTCGATTAC ATCTGCGCAT GCTGCAACAG CAGGTAAAGA TGTGACATCT AGCGCCATTA CAACTGTTGG CGGCTCTAGC GTTACCATTA CCTCAACTGC TGACACGTCC AAAGCTGCTG CCGATACAAA AGGCGCTACT TTGACCCAAG GTGATGTAAG CGTCACTGGT GGCGCATCAA CAACTGAAGT AACAGTCAAC CAAGCTGCAA ACGTTTCTAA GAATGCCGCA GTAGTGGCTG TCGCTGCGAA AGCCTCGACT CAAAAGCTGA CGTTCACAAA TGCTGCAGCA AATGATGTGA TCACTCTGAC ATTCGACACA GGTGATACTC TCGTCTTTAC AGCCTCGAAA GCGCTGACCG CAACCGAAGT TGCAACAGCT TTTGCGAACC TTGCAAAGAA TGCTACTGAA GGTTCTGCAC CGGTTGTCAA TGGTGTATAC ACCAACGGCG GTACGATCGA TCAAGGTTGG ACCTCGGGTG CTGTAACAGA TGTTAACGCA GATGATACTT CAGCATCTGT AACATTCAGT AACGAAGCTG CTGGCCCGAC CGCCCTGGTT GTCGCGAACG GGGGTACTGG TACAGCTACA GCTGCGACAC TTGCGGCCGG AACAGCTGCG ACGGCTGCTG AAACGGGGCG CCTAGGCGTT ATCGCTGGTA AAGTCACTAT CGATGGCAAC ATCACAGGCG ATGACGTTCT GAAAACGGTT ACAATCGACG CTTATGAAGA TGGGTCAACT GTCAAATCGG ACGCATTGGA AACTCTGACG CTGAAAAACG CTGACGAAGA TATCGTAGTG ACGACGGCGT CTACAGGTGC CATTACCCTG AACTTGGATG CTGTTGCTGG TAACGATGCT AAAGTCAGCC TTGATGGCAA TGCAGCGACT GTTACTGGTC TGACCATCAA CGCCACCGGC ACAAAGTCTG ATGCGGAAGT GACTGCAGAT GCTGCAACCA CAGTCACTGT GAATGCAGCG GTGGACATGG ACCTGACCGG TTCGTCTTTT GACAAAGCAA CCAAGATGGT TGTGACTGGT GCAGGTAAAG TGACTCTGGA TGGTGATGAT GTTGCGTCTG TCTTGGCTGA AGTTGATGCC TCGGGCGCGA CTGGTGATGT CGATGCTTCT GGTGTCGCGC TGACAGCTGC TGGTGTTTAC ACCGGTGGTT CGGGTGCAGA TACGTTCACC GTGACAGCCG CCGCGACCAA AGCAAGCACA GGTGGTGATG GCGACGACGT GATCACTGTA AGCACGCTCG GTACTGGTGG TTCGGTCGAC GCGGGCGCAG GAACAGATAC GCTGGTGATG GCAGCTGATG ACGCAGAAAC TGCATCAGCA ACTGCAGGTT TCAAAGCAAC TAACTTTGAG AAGTTGTCTA TTGGAGCCGT GGCTGACGCC ACAGCTGGTG CCGACACTGA AACTGTCAAC CTCGCAAACC TCGCCTTTAC TGAGGTAACA TCAGCAGGTG CTGTAGATGG TGACGAAGAC ATTCTCGCCC TCACTAATGC GGCTTCTGGC CTCACGCTCA ACATAACAGG TGAAGGCTTG TTTACGGTTG GGGTGAAAGA CGCAGCTACC AATAAAACAG ATGTTCTGAA TATCGCTTCG AACAGCGATG GTAACTTGGC GTTGGGTACT GTTACTGCTG CAAACGTCGA AACAATCAAC ATCAACGCAG TTGATAAGGT TGTTGACACA ACAGGAGCGA CCGATGCGTT CGGTGCGGCT ATTGGTGATG GGAAGGATGA TAACAACTCG GTTCAAACCC TTACCGTTGA TGCCGGTGCT GCAACTACGG TCAATGTGTC GGGTTCGGCT GACTTGGATC TTACCGTAAA TACTGCGACT GCTCTTACTG CGGTAAATGC TTCCACTGCA ACGGGTGCCG TCACATATAC AGCAAATGAC GGCACGACTA CCGTCACTGG TGGTTCGGGT AACGATAACC TGACTGCGGC CGGGGATAGC GATGTCTTGC TCGGTGGTGC TGGTAACGAC AAACTGACCG CAGCGACACT GACCACGCTG ACGGGTGGTG AAGGTAACGA TACCTTCGTA ATGAGTGGCG CAGTTGATGC AACGAAGTAT TCGACAATCA CAGACCTCTC GTCTGGCGAT ACGATTGATA CAGATGCAAC GGCATTCAAT TCGTCGAAAG TTGTGCTTGC TGCGAACGCC ACCTTTGCTC AATATCTGGA TGCTGCGATT GTGGCGACGG CAGCACAGGA CGACGCAGCT TCTTGGTTCC AGTTTGGCGG GAATACCTTC ATTGTGAATG AAGGTACGGA CGCGTCTGTA ACTTATAATG CTGCAGAAGA CGGTATCATC GGTATTACTG GTCTCGTTGA TCTGTCCGCT GCGACGTTCA ACGCTACTAA TGGTACGTTT GATATCGCGT AA
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Protein sequence | MAFWEGQLSS GAVSAADAID AIIKGATTAP DSTILTNKNA VGLDFATDAG NTPGFTFDLN GASGSAAKNA LAGVTDDAAT VTAAQAATDA YLSGVAGAGD TLSLTTGVDN ITGTVNQDTI KAVVGAGATL SAADVVDGGA GTDTLELVDA TGGQSLAAAL LNVSNVEELS IRSVGQAKAD TSGTAFTSVN ITQATSVDAD VNAATNVGVS GVTGAIAVDG GKDITITDAN DGANITVGGA TAVTGAVTVT DTKVGNAAIE VNGGTTVTVN ATGSSANNIK VGGATTTDQP SGAVSITSAH AATAGKDVTS SAITTVGGSS VTITSTADTS KAAADTKGAT LTQGDVSVTG GASTTEVTVN QAANVSKNAA VVAVAAKAST QKLTFTNAAA NDVITLTFDT GDTLVFTASK ALTATEVATA FANLAKNATE GSAPVVNGVY TNGGTIDQGW TSGAVTDVNA DDTSASVTFS NEAAGPTALV VANGGTGTAT AATLAAGTAA TAAETGRLGV IAGKVTIDGN ITGDDVLKTV TIDAYEDGST VKSDALETLT LKNADEDIVV TTASTGAITL NLDAVAGNDA KVSLDGNAAT VTGLTINATG TKSDAEVTAD AATTVTVNAA VDMDLTGSSF DKATKMVVTG AGKVTLDGDD VASVLAEVDA SGATGDVDAS GVALTAAGVY TGGSGADTFT VTAAATKAST GGDGDDVITV STLGTGGSVD AGAGTDTLVM AADDAETASA TAGFKATNFE KLSIGAVADA TAGADTETVN LANLAFTEVT SAGAVDGDED ILALTNAASG LTLNITGEGL FTVGVKDAAT NKTDVLNIAS NSDGNLALGT VTAANVETIN INAVDKVVDT TGATDAFGAA IGDGKDDNNS VQTLTVDAGA ATTVNVSGSA DLDLTVNTAT ALTAVNASTA TGAVTYTAND GTTTVTGGSG NDNLTAAGDS DVLLGGAGND KLTAATLTTL TGGEGNDTFV MSGAVDATKY STITDLSSGD TIDTDATAFN SSKVVLAANA TFAQYLDAAI VATAAQDDAA SWFQFGGNTF IVNEGTDASV TYNAAEDGII GITGLVDLSA ATFNATNGTF DIA
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