| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3835 |
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| Symbol | |
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| ID | 4074985 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | - |
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| Start bp | 81194 |
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| End bp | 82906 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638004493 |
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| Product | Type I secretion system ATPase, PrtD |
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| Protein accession | YP_611228 |
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| Protein GI | 99077969 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.171691 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0822882 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCCG GCTCCTCGTT AGCGCAAGCT TACGCAAAGT ATCGCTCTAT CCTTGCAGCT
ACCGTTGTGT TTAGTTTCTT TGTAAACCTG CTAATGTTCG TCGGGCCGAT GTACATGCTG
CAGGTCTATG ATCGCGTGTT GGCCAGCAGG AATGAGACAA CTTTGGTGAT GATTTCTATC
ATCGCAGTTG CGTTATTGAT TTCGTATGGT CTGTTAGAGT TTACCCGTTC TCGAATGTTG
GTTCGCGCAG GCTTGCAATT TGATCAAGTG CTTGCGAGCC CGCTATTTTC TCGTGTGGTT
CGTATGCAGC TCGCTAATCC CGCCTCTTCG GGGCGTAACG CTCTGAGCGA CGCAGACCGC
GTTAGAGATT TCATTACAGG GCAAGGCGTT CTGTCGTTTT TTGATGCTCC TTGGACACCT
TTGTTTTTGG TTCTGTGCTT TGCCTTTCAC CCATGGCTAG GTGCGGTTGC TACTGTAGGT
GCTGTGATCA TTTTTGCCCT CGCGTTGCTC AATGAATTTA TGACTCGGCA AAGTTTGCAG
GATGCAAATC AGGCGGGTGC AGCTGCATCC AACTTTGCTG GCGCGACCCT GCAGAATGCA
GAGGTTATTC GGGCTATGGG AATGGTAGAC CAGCTCCTTA ACCGCTGGCT TGGGAAGCGC
GATGAGATGT TGGCTGCCCA AGCGCGGGCA AGCGACCGCG CTGGTATCGT GCTTGCATGT
TCGAAGTTTG TTCGGATGAC ATTGCAAGTG GCAATCCTGG GCGTCGGCGC CTATCTAGCC
ATGAAGCAAC AAATCTCTCC TGGGATTATG ATCGCAGCAT CAATCGTTAT GGGACGAGCC
CTTGCGCCTG TTGAGCAAGC GGTTGGTCAG TGGAAACAAT TTGTCGCAGC TCGTCAGGCA
AACGATCGAT TGAAAAAGCT CTTTGATAGT CTGCCGGATG AGACTGATCG AACAGAGCTG
CCATCGCCAA AAGGAAAAGT TTCAGTTGCG GGGCTGACCT CCGCCTTACC TGGTGTGAAA
GAGCCCATCT TGAAGGGGGT TAGCTTTGAT ATTAACCCTG GTGAAGTTCT TGCATTGGTT
GGCCCATCAG GCTCTGGTAA ATCAACTTTG ATACGACACT TGGTAGGTGT GGCGCGAGCA
TCAGTTGGAA AGGTTTCGCT AGACGGCACC GATCTTCAAC ACTGGGACCC CAAACAGCTT
GGTCATTCGT TAGGATATCT ATCTCAAGAC ATCCGCTTGT TCGGTGGAAC GGTGGCAGAG
AATATTGCTC GCTTCCAAGA AGACGCTGAA GACAGCGAGA TTGTTGCGGC TGCAAAACTG
GCAGGCGCTC ATGATATGAT CTCTGGTCTG AGTAACGGTT ACCAAACTGA AGTTGGAGAT
GGTGGAAGCC AGTTGTCAGG CGGGCAGAGG CAGAGAGTTG GGCTGGCGAG AGCCATCTTT
AGATTGCCTG CAGTCGTAGT TCTTGATGAG CCTAATTCCA ACTTGGATAG TGAAGGCGAA
GCAGCGCTGG CTGCCTGTCT GGAGCAACTT AAAGCCATGG GAAGAACAGT CATCGTAGCA
ACGCACAAAG CTAACCTACT GTCGCTCTCC GATAAGACAC TCATTTTGAA TGCAGGTAGT
GTCCAACGGT TCGTCCCGAC AAAAGAACTT CTCCAGCCAC AACCACCCAA AGCCGCACAT
CCCCAAACCG TTAGTGCGGT CACCTCTCGC TAG
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| Protein sequence | MKSGSSLAQA YAKYRSILAA TVVFSFFVNL LMFVGPMYML QVYDRVLASR NETTLVMISI
IAVALLISYG LLEFTRSRML VRAGLQFDQV LASPLFSRVV RMQLANPASS GRNALSDADR
VRDFITGQGV LSFFDAPWTP LFLVLCFAFH PWLGAVATVG AVIIFALALL NEFMTRQSLQ
DANQAGAAAS NFAGATLQNA EVIRAMGMVD QLLNRWLGKR DEMLAAQARA SDRAGIVLAC
SKFVRMTLQV AILGVGAYLA MKQQISPGIM IAASIVMGRA LAPVEQAVGQ WKQFVAARQA
NDRLKKLFDS LPDETDRTEL PSPKGKVSVA GLTSALPGVK EPILKGVSFD INPGEVLALV
GPSGSGKSTL IRHLVGVARA SVGKVSLDGT DLQHWDPKQL GHSLGYLSQD IRLFGGTVAE
NIARFQEDAE DSEIVAAAKL AGAHDMISGL SNGYQTEVGD GGSQLSGGQR QRVGLARAIF
RLPAVVVLDE PNSNLDSEGE AALAACLEQL KAMGRTVIVA THKANLLSLS DKTLILNAGS
VQRFVPTKEL LQPQPPKAAH PQTVSAVTSR
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