| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3813 |
|---|
| Symbol | |
|---|
| ID | 4074964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008042 |
|---|
| Strand | - |
|---|
| Start bp | 63353 |
|---|
| End bp | 64732 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638004472 |
|---|
| Product | conjugation TrbI-like protein |
|---|
| Protein accession | YP_611207 |
|---|
| Protein GI | 99077948 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 52 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.387098 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATA CCGGAAACGC GGACCTCGAG AAACGTCTCG CTGCCCTGGA GCAAGGCAAG
GGCGCTGGTT CGCCCCCTGC CCCACGGCGC TCACCGCTGC TCGCTTTGGT CGTCGTCCTC
GTGATCGGCG CGGGCGGTGC GTTGCTGTAT CTCCTGTCCC GACCCGAGGA AGAGGAAGCC
CTTCTCACGG CCACGCCGGA CGTGTTCCAG AACGAAGGCG ACGGGTTCGG CGCCATCGAG
ACCTTGCCCC CGCGCGAGCC CGAGGTTGTG TTCGTCGCAC CCGATCCGAT CGAACCCAAT
GCTGAGCTTT TGGCGCGGAT CACCGCCCTG CAGGCTCAGA TCGAGGAATT GCGCAACGCC
CCTGAACCGG TCGTCGAGGA AGACACCGCC GCCGCCGAGG CGATCGACGC GCTGACCGCT
CAGATCGCTG CGCTGCAAAC CGCGTCGGAA GCCGCGCAAC AGCAGTTTCG CGATGAACTC
ACGGCGCGCG ATCGCGAGCT CGAGCAACTC CGCATGGACC TCGAACTTGC GCAGCTCGAA
GCCAACCGCC CCCTTCCGGC ACCCATCGGC CCCACCGAGG ACGAGTTGCG CGCGCGGGAA
GAAGAACGGC TGCGCCGCGA GGAAGAAGCA CGACGGCTCG CGGAACTTGA ACGCCGCGCC
GCGGAGGAGC GCGCGTTTCA GGAGCGCCGC ATCACCTCGC CCACCATTGC CTTTGGTGGC
ACGTCCGGTG CGAATGAGAC GGCGCTGACC GAGCGCACCT TTGGCGAAGT GACGGATTTC
GTGTTGAACG GTGCGCTGCC CTCCACCGTG ACGCAGGCAG AAGTGATCGC CAATCCCTCC
AACACCATCA TTCAGGGCAC GATGATCCAG GCCGTCATGG AAACCGCTCT CGATAGCGCC
CTGCCCGGCC AAACGCGTGC TGTTGTCTCG GAAGATGTCT TTAGCTTCGA CGCTTCCCGC
CTCCTGATCC CACGCGGCTC CCGTCTCATC GGGCGTTATC GTTCGGGGGT CGATATCGCG
CAGCGCCGGG TCACCATCGC CTGGGACCGG GTCATCTTGC CTGACAACCA GACGATCCAG
ATCAGCTCAT TCGGGGGCGA TGAACTTGGC CGTTCCGGCG TGACCGGCTT TGTCGACACC
CGGTTTGATG AGCGCTTCGG CTCAGCGGCG TTGATTTCGC TGATTTCCGC CGCGCCAAGT
GCCGCCGCTG CAAATGTGCA GGATGAGACC GCAGCGGATG TGCTCGAAGA CGTGGGCGAT
GATCTTGCCG ATGCTACGGA CAGCGTGATC GGCGATTACC TTTCGATCGG TCCCGTCATT
TATGTGGACC AGGGCGCGCG CGTCACGGTG ATGGTCGACC GCGATCTGGA GATTTTCTGA
|
|---|
| Protein sequence | MSDTGNADLE KRLAALEQGK GAGSPPAPRR SPLLALVVVL VIGAGGALLY LLSRPEEEEA
LLTATPDVFQ NEGDGFGAIE TLPPREPEVV FVAPDPIEPN AELLARITAL QAQIEELRNA
PEPVVEEDTA AAEAIDALTA QIAALQTASE AAQQQFRDEL TARDRELEQL RMDLELAQLE
ANRPLPAPIG PTEDELRARE EERLRREEEA RRLAELERRA AEERAFQERR ITSPTIAFGG
TSGANETALT ERTFGEVTDF VLNGALPSTV TQAEVIANPS NTIIQGTMIQ AVMETALDSA
LPGQTRAVVS EDVFSFDASR LLIPRGSRLI GRYRSGVDIA QRRVTIAWDR VILPDNQTIQ
ISSFGGDELG RSGVTGFVDT RFDERFGSAA LISLISAAPS AAAANVQDET AADVLEDVGD
DLADATDSVI GDYLSIGPVI YVDQGARVTV MVDRDLEIF
|
|---|
| |