Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3785 |
Symbol | |
ID | 4074880 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008042 |
Strand | + |
Start bp | 33104 |
End bp | 35482 |
Gene Length | 2379 bp |
Protein Length | 792 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638004445 |
Product | hemolysin-type calcium-binding region |
Protein accession | YP_611180 |
Protein GI | 99077921 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.0346171 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGATA ACGACAGTGG CACTCCAGCT ACCGAAAGCA ATCAGACACT CACAGGAACC GGAGCGGACG ACCAGCTATC TGGCGGGCTT GGTGATGATG TCATCACGGG TGGCGCGGGT GACGATGTTC TGCGTGGTGA CGGTCCAATT GCAGGTTCTT GGCACTATGA AACCTTTGAT CGCAATTTTA CCTCTGCGAA TGGGCAAGCT TTTGACTTTG GAGGTGATGC AAGCGAGCGC ACAGGGTCCG GTTATGTCAC TGACTTTGAT GAATCCAGCC TAACAAACGC TATTCGCGGA ACGACAGGAA ACCCAGGCGA TTTCGGTGTT ATCTACACCA GCACGCTGAA TATTACCGAT AGTGGCGTCT ATACGTTCGC GACCAATTCT GACGACGGTT CGACAATCCA GATATTCGAC AGCGCAGGTA CTCCCGTCAC GTTCACGCAG GGTGGGACAA CTGCGGACTA CATGAACAAC GACTTTCACC AGCCAGCTAC GACAAGATCT GGTCAAGTCA CGCTCGACAG TAATGAAACT TATACGATCC AGGTTCGGTA TTGGGAAAAT CAGGGTGCAG ACGTTCTTCA GGTTACAGTC GATCCGCCTG GGTCGACGGG GGCGGTCAAT ATAAATGACA GTGGCCTGGT GGGGGTGCCC CCGGACCCTG ATTATTCGAC AACGGGCGTA CCAGCTGGCG TTGAGGGAGA CGACTTTCTC AGCGGAGGTG CGGGAAATGA CACCCTTTGG GGCGATGGAG GCGACGACAC GCTCAACGGT GGTGCGGGTG ACGACATCAT TGATGGCGGC AGGGGGGCAG ACACGATCGA TGGTGGATTT GGGCTCGATA CCATCGACGG GGGCGAGGAA GACGACATCA TTGCAGGTGG TGAAGGCAAT GATGTGATCA CTGGTGGTGT TGGTGATGAC ATCATATTTG GAGACGAGTT CGACCCCGGT GCGGGGAATG AATATTTTTA TGTGGGCAAT GCCTACATTG CCGACGAAAA CTATACCATC ACCGGGTCAG GCGATTTTGC GGGCCCCACA GCGAGTGAAA TTCAAGTCAC AACTGATCCC GTCACAATAC GGTTTCTGGA TGATGACACA TCCTTGGGTG GTGATGACGG GGCAAATGAA GTCAGGGCAG ACCCGACATT TCAGAGGGTT GAGATTGATG GGGTCGAATA TGGGGCGAAT CTGGATTTCA GCGTTACGTT TGAAGATCCC ACGGGCACTG TCTACCGGTT TGCAGTGCTC GATGTCGACT TTGATGGGGA CGGCTCCAAC CAAGATGCCA ATGAAGACGG CCATATCCTC ATACAGATCG ATGGCCCGGC CATCGTGCCC GGAACTGTTC TTGATACTCG TAGTGGGTTT CAGAACATTT CCGCAACCGA CTACGACGCT CTGAGAGCAG CGACTGCATT TAACGACACC ATTGATGGCG GAGATGGTAA TGACACAATC GAAGGTGGGC GTGGCAATGA TGCCATCACA GTAGGTCGTG GTGATATAGC TACCGGTGGT GCGGACGCTG ATACTTTTAC GTTGGATTTT GGTCAAACCA GCACTGACGG ATCAATGGTC GTTACCATTG ACGGCTCAAC TACCGAGATC GACGGAGTTG ACAATGATAG CTTGGACCTG ACTGGTTTTG GTACGTTCAC TCTCACACAG ACCACCGACA CAGACGGTAA TTCAACAAGC GGTACAGCAG TTTATGCAGA TGGAACGACT GTCAACTTCA CCGAAATTGA AAATCTGATT GTGTGTTTCG CAAAAGGAAC ACAGATCAAG ACAAGTGATG GTATTCGCGA CATTGAGAGC CTGCAAGTTG GCGACAAGCT CGTAACCAAA GACAATGGCC TGCAGTCTAT TCGGTGGATC GGCAAGCGGA CGCTGAGTGA AGACAAACTA GACGCCCACC CAAAGCTCAA ACCCATCCGC ATCAAAGCGG GCGCATTGGG CGAAGGGATG CCTTCACGTG ATCTGATTGT TTCTCCACAA CACAGGATCG TTGTTCGGTC CAAGATCGCA ATCCGAATGT TTGACACGCA AGAAATACTT GTGCCTGCAA AGCACCTGAT TGGCCTACAG GATGTGTCGA TTGCTGCCGA AATGCGCGAA GTGACTTATT ATCATTTGTT GTGCGACAAT CATGAGATCA TCGAGGCAGA TGGCGCATTC GCTGAGACAT TATACACGGG TACAGAGGCG ATGAAAGCGA TGTCGCCAGA GGCACTAGAA GAGATTATGC TGATCTTGGG AGATCAGTTC TCGACGCGCC GACCATTGGC CAGGTTCACG CCAAAGGGTC GGCAGGCCAA GAAATTGATA GAACGTCATA TCAAGAATGA TCGAGCGGTG TATTGTTAA
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Protein sequence | MADNDSGTPA TESNQTLTGT GADDQLSGGL GDDVITGGAG DDVLRGDGPI AGSWHYETFD RNFTSANGQA FDFGGDASER TGSGYVTDFD ESSLTNAIRG TTGNPGDFGV IYTSTLNITD SGVYTFATNS DDGSTIQIFD SAGTPVTFTQ GGTTADYMNN DFHQPATTRS GQVTLDSNET YTIQVRYWEN QGADVLQVTV DPPGSTGAVN INDSGLVGVP PDPDYSTTGV PAGVEGDDFL SGGAGNDTLW GDGGDDTLNG GAGDDIIDGG RGADTIDGGF GLDTIDGGEE DDIIAGGEGN DVITGGVGDD IIFGDEFDPG AGNEYFYVGN AYIADENYTI TGSGDFAGPT ASEIQVTTDP VTIRFLDDDT SLGGDDGANE VRADPTFQRV EIDGVEYGAN LDFSVTFEDP TGTVYRFAVL DVDFDGDGSN QDANEDGHIL IQIDGPAIVP GTVLDTRSGF QNISATDYDA LRAATAFNDT IDGGDGNDTI EGGRGNDAIT VGRGDIATGG ADADTFTLDF GQTSTDGSMV VTIDGSTTEI DGVDNDSLDL TGFGTFTLTQ TTDTDGNSTS GTAVYADGTT VNFTEIENLI VCFAKGTQIK TSDGIRDIES LQVGDKLVTK DNGLQSIRWI GKRTLSEDKL DAHPKLKPIR IKAGALGEGM PSRDLIVSPQ HRIVVRSKIA IRMFDTQEIL VPAKHLIGLQ DVSIAAEMRE VTYYHLLCDN HEIIEADGAF AETLYTGTEA MKAMSPEALE EIMLILGDQF STRRPLARFT PKGRQAKKLI ERHIKNDRAV YC
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