Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Synpcc7942_0080 |
Symbol | |
ID | 3773797 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus elongatus PCC 7942 |
Kingdom | Bacteria |
Replicon accession | NC_007604 |
Strand | - |
Start bp | 77648 |
End bp | 78871 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637798486 |
Product | ABC transporter permease |
Protein accession | YP_399099 |
Protein GI | 81298891 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGTCG ATTGGTCTGA AAGCCTCTCA ATGGCGGTCA AAACTCTGCG AGCCAATCGG CTGCGCAGCG CTCTGACCAT GCTGGGCATC ATCATCGGCA ACGCCTCGGT GATCACGATG GTGGGTGTTG GGCAAGGGGC ACAACGCCTA GCATCAGAGC AATTCGAGTC CTTGGGGCCG AATGTACTGT TCATCGTGCC GGGCAACCAA GATACGCGGC GCGGCGGCTT GGATATTCCC AAAACCTTGG TTTTGGCTGA TGCCGTGGCG ATCGCGACTC AAGTACCAAC CGCCGGCGAA GTCGCCCCCC AAGTCAGTAC CCGCCAGTTG GTGACCTACC AAGGCGAATC GAGCACCACC CAAGTCTTTG GCGTGACGCC TAGCTTCTTG ACGGTGCGGA GTTTTAGCGT GGCGCGGGGC CGCTTCTTTA GTGATCTCGA TCTCAGTCGG GCGGAACAGG TCGCCGTTCT GGGGAGCGAC CTAGCGATAA AGCTGTTTGG CGTCCAAAAT CCCGTCGGGG CCAGCATCCG CATCAAGGGA GCCTCCTTCC GCGTCATTGG CGTGATGGAA CCCAAGGGTA GCTTTTTGGG CAATAACCAA GATGATGCGG TCTACTTGCC CTTGACCACG GTTTCCAGTC GCATTCTCGG CACCACTTCG CCCTACGGCA TTGAAGTCAG CTTTATCTCC GTCGCGGCCA AGGATGCCAA CAGCATTGAT GCGGCACAGT TTCAAATCAC CAACCTGCTA CGGCAGCGGC ACCGGATTAT CCGCGAGGAT GATTTTGAGG TGCGATCGCA AAAGGATGTC TTGACGATTG TGGGCACCGT CACCAATGGC CTCACCCTGA TGCTGTCTGC GATCGCCGGT ATTTCCCTGT TGGTCGGCGG CATCGGCATC ATGAACATCA TGCTGGTCTC CGTCTCGGAG CGCACCCAAG AAATTGGCCT GCGCAAAGCG ATCGGGGCGA CCCAAAAAGA CATCCTCAAT CAGTTCATGA TCGAGGCCGT GATTTTGGCC CTGCTAGGCG GTGCGATCGG CACTGGGTTG GGCATTACTG GCGTCACTGC GATCGCCCTA CTTACCCCGC TCAAAGCCGG CGTTTCTCCC GTGGCGATCG CGATCACCGT CACGATTTCC AGCGGTATCG GCCTGTTCTT CGGCGTCGTG CCAGCCCGCC AAGCCGCACG TCTCGACCCG ATCGTGGCGC TACGCAGCGC CTAG
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Protein sequence | MSVDWSESLS MAVKTLRANR LRSALTMLGI IIGNASVITM VGVGQGAQRL ASEQFESLGP NVLFIVPGNQ DTRRGGLDIP KTLVLADAVA IATQVPTAGE VAPQVSTRQL VTYQGESSTT QVFGVTPSFL TVRSFSVARG RFFSDLDLSR AEQVAVLGSD LAIKLFGVQN PVGASIRIKG ASFRVIGVME PKGSFLGNNQ DDAVYLPLTT VSSRILGTTS PYGIEVSFIS VAAKDANSID AAQFQITNLL RQRHRIIRED DFEVRSQKDV LTIVGTVTNG LTLMLSAIAG ISLLVGGIGI MNIMLVSVSE RTQEIGLRKA IGATQKDILN QFMIEAVILA LLGGAIGTGL GITGVTAIAL LTPLKAGVSP VAIAITVTIS SGIGLFFGVV PARQAARLDP IVALRSA
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