Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Synpcc7942_0049 |
Symbol | |
ID | 3775762 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus elongatus PCC 7942 |
Kingdom | Bacteria |
Replicon accession | NC_007604 |
Strand | - |
Start bp | 49550 |
End bp | 49984 |
Gene Length | 435 bp |
Protein Length | 144 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637798455 |
Product | pilin polypeptide PilA-like |
Protein accession | YP_399068 |
Protein GI | 81298860 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.0965276 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGACT CCCTCCGTCT TCGTTATCTA CAATATCTTG CCCAGCGTAA AGACGAACAA GGTGAAGAAG AAAAAGGTTT TACCCTTGTC GAGTTGCTGG TCGTTATCAT TATCGTTGGC ATCTTGGCAG CAGTTGCATT ACCGAACCTG TTGGATCAAA CAGATAAAGC CTATGCCTCT GAAGGCAAAT CAGCAGTCGG TGCTGCTCTT CGTACCCTTA GTGCGGCGAC ACTAGATCCT AACTACGTCA CCAATGCGTC TTGTACACAG CTTGGTATTG GTAGCAGTGC AGGTAACTTT AACATAACTT GCGGCAATGC TAGCCAAGTA ACGGCTGCTG GAAGTGGTAA AGCAGCGAAT ATTAACGTGA CTGGCACAAT CGGGACAGAC GGTAAATTTA CCGTTATTGC AACCAAAGGC AGCGCAACTC TTTAA
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Protein sequence | MSDSLRLRYL QYLAQRKDEQ GEEEKGFTLV ELLVVIIIVG ILAAVALPNL LDQTDKAYAS EGKSAVGAAL RTLSAATLDP NYVTNASCTQ LGIGSSAGNF NITCGNASQV TAAGSGKAAN INVTGTIGTD GKFTVIATKG SATL
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