Gene Synpcc7942_0049 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0049 
Symbol 
ID3775762 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp49550 
End bp49984 
Gene Length435 bp 
Protein Length144 aa 
Translation table11 
GC content46% 
IMG OID637798455 
Productpilin polypeptide PilA-like 
Protein accessionYP_399068 
Protein GI81298860 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2165] Type II secretory pathway, pseudopilin PulG 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.0965276 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGACT CCCTCCGTCT TCGTTATCTA CAATATCTTG CCCAGCGTAA AGACGAACAA 
GGTGAAGAAG AAAAAGGTTT TACCCTTGTC GAGTTGCTGG TCGTTATCAT TATCGTTGGC
ATCTTGGCAG CAGTTGCATT ACCGAACCTG TTGGATCAAA CAGATAAAGC CTATGCCTCT
GAAGGCAAAT CAGCAGTCGG TGCTGCTCTT CGTACCCTTA GTGCGGCGAC ACTAGATCCT
AACTACGTCA CCAATGCGTC TTGTACACAG CTTGGTATTG GTAGCAGTGC AGGTAACTTT
AACATAACTT GCGGCAATGC TAGCCAAGTA ACGGCTGCTG GAAGTGGTAA AGCAGCGAAT
ATTAACGTGA CTGGCACAAT CGGGACAGAC GGTAAATTTA CCGTTATTGC AACCAAAGGC
AGCGCAACTC TTTAA
 
Protein sequence
MSDSLRLRYL QYLAQRKDEQ GEEEKGFTLV ELLVVIIIVG ILAAVALPNL LDQTDKAYAS 
EGKSAVGAAL RTLSAATLDP NYVTNASCTQ LGIGSSAGNF NITCGNASQV TAAGSGKAAN
INVTGTIGTD GKFTVIATKG SATL