Gene Synpcc7942_0048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0048 
Symbol 
ID3775761 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp48927 
End bp49361 
Gene Length435 bp 
Protein Length144 aa 
Translation table11 
GC content48% 
IMG OID637798454 
Productpilin polypeptide PilA-like 
Protein accessionYP_399067 
Protein GI81298859 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2165] Type II secretory pathway, pseudopilin PulG 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.335089 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGAAT CGCTCCGTCT ACGTTATCTG CAATATCTTG CCCAGCGTAA AGACGAACAA 
GGTGAAGAAG AAAAAGGTTT CACCCTTGTC GAGTTGCTGG TCGTTATCAT CATCGTTGGC
ATCTTGGCAG CAGTTGCATT ACCGAACCTG TTGGCTCAAA CAGATAAAGC CTACGCCTCT
GAAGGTAAAT CAGCAGTCGG TGCTGCTCTT CGTACCCTTA GTGCGGCGAC ACTAGACCCT
AACTACGTCA CCAATGCGTC TTGTACACAG CTTGGTATTG GTAGCAGTGC AGGTAACTTT
GACCTAACTT GTGGCAATGC TAGCCAAGTA ACGGCTGCGG GAAGTGGTAA AGCAGCGAAT
ATTAACGTGA CTGGCACAAT CGGGACAGAC GGTAAGTTTA CCGTTATTGC AACCAAAGGC
AGCGCAACTC TTTAA
 
Protein sequence
MSESLRLRYL QYLAQRKDEQ GEEEKGFTLV ELLVVIIIVG ILAAVALPNL LAQTDKAYAS 
EGKSAVGAAL RTLSAATLDP NYVTNASCTQ LGIGSSAGNF DLTCGNASQV TAAGSGKAAN
INVTGTIGTD GKFTVIATKG SATL