| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_0001 |
|---|
| Symbol | |
|---|
| ID | 3774221 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | + |
|---|
| Start bp | 65 |
|---|
| End bp | 1237 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637798406 |
|---|
| Product | DNA polymerase III subunit beta |
|---|
| Protein accession | YP_399020 |
|---|
| Protein GI | 81298812 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
|---|
| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.174171 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.105878 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTGGC AAGATTGCGA TCAAAGGCTC GGGCAGCCTC CCCCCATGAA GTTGGTCTGT
CGCCAAAACG AACTGAATAC CAGTCTGTCG CTCGTTAGCC GTGCTGTACC TTCCCGCCCG
AATCATCCGG TGCTTGCCAA CGTGCTTCTA GCGGCTGATG CCGGTACTCA ACGACTGAGC
TTAACCGCCT TTGATCTCAG CCTCGGAATT CAAACCAGCT TTGCCGCGCA AGTCGAACGG
AGCGGTGCCA TCACTCTACC GGCCAAGCTG CTCAACGATA TCGTTTCGCG CCTCCCCAAC
GACAGCGACG TCACGCTGGA AGACAACGAT GCAGCGGCGA CTCTGTCAGT GGGGTCTGGC
CAGTACCAAA TGCGGGGGAT CAGTGCCGAT GAATTTCCTG AGTTGCCTCT GGTTCAGAGC
CAAGAAGCTC TACAACTCTC CGCCAGCGCT TTGATCGAAG GGCTGCGTGG CACCCTGTTT
GCGACTAGTG GGGATGAAAC CAAGCAAATC CTGACGGGCG TCCACCTCAA GGTACAACCC
GATGGCCTAG AGTTTGCAGC GACGGACGGT CACCGCTTGG CTGTGGTTAA AACCGAGAAT
GCCGCAGCAA CTCCAGCTAC TGAGTTTGCT GTGACGGTGC CTTCGCGGGC CTTACGGGAC
CTAGAGCGGA TGATCGCGAT TCGCGGCAGT GACGAGGCGA TCGCGCTTTA TCATGACCAA
GGTCAGACTG TCTTCCAGTG GGGCGACCAG TACCTAACGA GCCGGACATT GGATGGCCAA
TATCCCAACT ACGGGCAGCT GATTCCGCGG GAGTTCAATC GCAACGTTGC CGTCGATCGC
AAACGCCTGC TGGCCGCGCT GGAGCGGATT GCAGTGTTGG CGGATCAGCA AAATAACGCC
ATCCGTCTTT CCCTTGATCC GGAGAACAAT CGCCTAGCCT TAGCAGTCGA TGCACAGGAT
GTGGGAAGCG GTCAAGAAGC CGTGCCGGCT GAAATCATCG GTGAACCCTT GGAGATCGCC
TTCAATGTGC GCTACCTCGC CGAAGGGCTG AAAGCCTTGA ACACCACGGA CATTCAGATT
CAGCTCAACA GCAACACCAG CCCTGTCGTG CTCAGTCCGT TGGGACCCGT CAAAATCACC
TACTTGGTGA TGCCGATTCA GTTGCGCAGC TAG
|
|---|
| Protein sequence | MLWQDCDQRL GQPPPMKLVC RQNELNTSLS LVSRAVPSRP NHPVLANVLL AADAGTQRLS
LTAFDLSLGI QTSFAAQVER SGAITLPAKL LNDIVSRLPN DSDVTLEDND AAATLSVGSG
QYQMRGISAD EFPELPLVQS QEALQLSASA LIEGLRGTLF ATSGDETKQI LTGVHLKVQP
DGLEFAATDG HRLAVVKTEN AAATPATEFA VTVPSRALRD LERMIAIRGS DEAIALYHDQ
GQTVFQWGDQ YLTSRTLDGQ YPNYGQLIPR EFNRNVAVDR KRLLAALERI AVLADQQNNA
IRLSLDPENN RLALAVDAQD VGSGQEAVPA EIIGEPLEIA FNVRYLAEGL KALNTTDIQI
QLNSNTSPVV LSPLGPVKIT YLVMPIQLRS
|
|---|
| |