| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3565 |
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| Symbol | |
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| ID | 6117899 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4352459 |
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| End bp | 4353241 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641635118 |
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| Product | triosephosphate isomerase |
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| Protein accession | YP_001761924 |
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| Protein GI | 170727898 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0149] Triosephosphate isomerase |
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| TIGRFAM ID | [TIGR00419] triosephosphate isomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.147919 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000496067 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCACTCA GACGTCCAAT GGTCGCTGGT AACTGGAAAA TGAATGGCAG TGCACAGCTT
GCACAAGAGC TATTCAAAAA GTTCGCTACC AAACTTCAAA ATGATTCTGC GGAAGTGGTC
TTGTGTCCGC CAACGATTTA TCTAGAGAGC GTACGTCAGC AGTTAGACGC TAACAAGGAA
GCCTTAAATG GTTGTCTTGT CAGAATGGGC GCACAAAACC TTAGTCAACA TGATTTTGGT
GCTTATACTG GTGAAGTGTC AGGGCAGATG TTAAAAGATT CAGGATGTCG ATATGTTATT
ATCGGACACT CCGAACGTCG CCGTATGTAC GGAGAGACGA GTGATATCGT TGCAGAGAAG
TTTGCTGCAG CACAAAAACA TGGTTTGACC CCAATATTAT GTGTTGGTGA GTCCGGTCCA
GCTAGAGAAG CGAGACGTAC CTTTGAGGTG ATCGCAGAAG AGTTAGATGT CGTCATTGAG
AAAAATGGCA CCATGGCTTT TGATAACGCA ATTATCGCCT ACGAACCTTT ATGGGCAGTA
GGAACAGGTA AGAGTGCTAC GCCAGAGCAG GCTCAAGAAG TTCATGCGTT TATTCGCAAG
CGCCTCTCTG AAGTGTCTCC ATTTATTGGA GAGAATATCA GGATTTTGTA CGGTGGCAGC
GTAACACCGA GTAATGCAGC AGATTTATTT GCTCAACCTG ATGTCGATGG TGGATTGATT
GGCGGAGTGA GCTTAAACTC TACCGAGTTT CTAAGTTTAT GTTCCATAGC GATGAGCGCA
TAA
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| Protein sequence | MALRRPMVAG NWKMNGSAQL AQELFKKFAT KLQNDSAEVV LCPPTIYLES VRQQLDANKE
ALNGCLVRMG AQNLSQHDFG AYTGEVSGQM LKDSGCRYVI IGHSERRRMY GETSDIVAEK
FAAAQKHGLT PILCVGESGP AREARRTFEV IAEELDVVIE KNGTMAFDNA IIAYEPLWAV
GTGKSATPEQ AQEVHAFIRK RLSEVSPFIG ENIRILYGGS VTPSNAADLF AQPDVDGGLI
GGVSLNSTEF LSLCSIAMSA
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