| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2731 |
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| Symbol | tolB |
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| ID | 6117039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3347098 |
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| End bp | 3348426 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641634271 |
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| Product | translocation protein TolB |
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| Protein accession | YP_001761102 |
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| Protein GI | 170727076 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00144802 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000043993 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAAGACTT TGGGGAAATG GCTCTTGCTA GGGCTGGTTG TAATGAGTAT GCCAGCTAGG
GCTGCATTAG ATATTGTGAT CACTGAAGGG GTTGATGCTG CGCGTCCTAT CGCTGTTATC
CCTTTTGTTT GGCAGGGACA AGGACCTGCG CCGCAGCAGA TTTCCGATGT TGTGATGTCT
GACTTGGCAC GCAGTGGTAC ATTTAACCCG ATAGATGAGC TTGGTTTACC CCAACGTAAT
ATCGCCAAGG TGTCACAGTT TGTGGCTAAA GAGTGGTCCA ATGTTGCTGC TGAGGCAGTG
GTCATGGGCT CAGTTAAACC TATGGGACCT GATCAATTTT TAGTTAATTT TGAACTGGTG
GATTTAGTTA AAGCTCAAAT GCAAGCGGGC AATGGCCCAC AATCAAGCAG TGAGTACCTT
ATTGATAGCA GTGAAGTGGT TATCAGCGCT GAGCAGTTTC GTCAATATGG TCATAGGATC
AGTGATATTG TTTATGAGAA GCTGACCGGT ATTCGTGGTG CTTTCTTAAC TCGTATTGCC
TATGTAGTGG TTAAGCATGG TGAAAAATCG CCTTATCATC TAATGATCTC TGATTATGAT
GGCCACAATG AAAAGATGTT GCTTCGCTCT CCTGAGCCAT TAATGTCGCC TTCTTGGTCT
CCAGATGGAA GTAAATTGGC TTATGTTAGT TTTGAGAACA AAAAAGCGGA AGTTTTTGTG
CAGAATATTT ATACACAAGC TCGCGCTAAA ATCACCAGTT ATGATGGTAT TAATGGGGCA
CCTGTTTTTT CTCCAGATGG GAAAAAGTTG GCTCTGACTC TATCAAGAGA TGGTCAGCCT
GAGATCTATG TTGTCGATAT TGATACCAAA GCATTGAAGC GTGTCACTAA TCATTATGCT
ATTGATACTG AAGCGTCATG GTTTCCAGAT GGCAAGTCGC TTATCTTTAC CTCTGAACGC
GGCGGACGCC CACAAATTTA CAAGGTGACA TTAGCATCTG GAAAAGTTCA GAGAATGACA
TTTGAAGGGG AGTGGAACTT AGGTGGTTCA ATCTCACCCG ATGGCCGCAG TATGATATTT
GTTAATCGTA CTAATGGTAA GTTTAATATT GCCCGTATGG ATCTCGAAAC ACGTTTTGTG
CAGGTATTAA CATCTACCCG TCTCGATGAG TCGCCAAGTG TCGCACCAAA TGGCACTATG
GTTATCTACG GGACGACTTA TCAAGGAAAG CAGGTTTTAG CAGCAGTTTC AACGGATGGA
CGTTTTAAGG CCAGACTGCC AGCAGGTCAG GGGGAAGTTA AGTCTCCCTC TTGGTCACCA
TTTCTATAA
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| Protein sequence | MKTLGKWLLL GLVVMSMPAR AALDIVITEG VDAARPIAVI PFVWQGQGPA PQQISDVVMS
DLARSGTFNP IDELGLPQRN IAKVSQFVAK EWSNVAAEAV VMGSVKPMGP DQFLVNFELV
DLVKAQMQAG NGPQSSSEYL IDSSEVVISA EQFRQYGHRI SDIVYEKLTG IRGAFLTRIA
YVVVKHGEKS PYHLMISDYD GHNEKMLLRS PEPLMSPSWS PDGSKLAYVS FENKKAEVFV
QNIYTQARAK ITSYDGINGA PVFSPDGKKL ALTLSRDGQP EIYVVDIDTK ALKRVTNHYA
IDTEASWFPD GKSLIFTSER GGRPQIYKVT LASGKVQRMT FEGEWNLGGS ISPDGRSMIF
VNRTNGKFNI ARMDLETRFV QVLTSTRLDE SPSVAPNGTM VIYGTTYQGK QVLAAVSTDG
RFKARLPAGQ GEVKSPSWSP FL
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