Gene Swoo_2596 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2596 
Symbol 
ID6116893 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp3173701 
End bp3175074 
Gene Length1374 bp 
Protein Length457 aa 
Translation table11 
GC content42% 
IMG OID641634126 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_001760968 
Protein GI170726942 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.338905 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTCTAC CAATATCAGG CCTTTTTTCA CATCTGCAGT TTAAATTATT CAGCTATTTT 
GCCATCTCAC TTTTAGCTAT TTTACTGATA GCAACCGCCA TTGAAAGCTT GGTATTAAAT
AAATTGCTCA CTTTACCTTC AACCACACAG GAGCAGCTCA CAGAACTTGC CAGTGAAGCA
AAAGTTTTTA TTAGAAACAG CGATATAGAG GGGTTAACTC AATGGGAAAA ACAGCAGGTA
TTCACGCTTT TTATTCTCAA TAACGATCTT CAAGCGCTCA CTAAGCGAGA GATGCATCCT
CATTTTGTTT TTAAGCTTAA GTATTTAAAG CAGCTTAAAC AACCGATGGG GGATCGTGTT
CAAAAGCCCT TAATCGCTGT TCCTTTGGGT AAGCACCTTA TCAATAATAA AAGGCAAGAG
TTAACGTTAG TGGTGCAGCT CAATGCTGCA CTTCATCCAG CACAACAGCT AAGTAGTAGC
TTATGGGTAA TCCGCACACT TGTCGGTTTT GCTGTACTCG TGATGTTTAG CTCCATCCTA
AGCAAATACT TAATCACTCC GCTCACACAC CTGCAAGCTG GCACACAAGC ATTAGCAAGT
GGAGATCTTA ATACCCGTAT TGCTCAGCAC TTCTCCACCA AAGAGCCTGA GTTTTATAAG
TTAGCCACAG AGTTTGACCA TATGGCTGAG CAAGTTCAGC AGTCGATGCT TAACCAACAA
AGATTATTAA GGGATGTTTC ACATGAGCTG CGTACCCCGT TAGCTAGACA AGAGCTGGCA
CTTCACCTTT TAAGCAAACA ACTTAATGAC TCACATCTTA CTCTGTTACA TAGACTTGAA
CATGAAAATG CAGAGATGTC AGCATTGATC AATACCATGC TTAACTTCAG TCGACTTAAC
AACGCTTATA TTGATCTCAA CATACAAGCA GTTCCAATCA ATGAGATCCG CAGTAGATCA
CTTAACGATA TTGAATTCGA GGCGAAAGCG GGACAAACCA TTATCTGGCA CTCTCAGCCA
GACACTGTCA CTCTGATCAC TGATGTAGGC CTATTGACTC GTGCCATAGA CAACGTACTC
AGAAATGCAC TTAAGTATGC GGGAGAGTGC TGCACCATAG AAGTGAGCTA CATTAAGAGC
CCTAACGGCG TTGTTCTTAC CATTATGGAT GATGGCCCAG GGATTGAGCA CTCAGAGTTA
GAGACCGTAT TTAACCCTTT CACTCGTATG GATGATGCAA GGCATTCAAG TCAAGGGGGT
TATGGCTTAG GATTAGCGAT AGTAAAACAG AGCATGAAAC TGTTAGGAGG CGAAGCTGTT
GCCGAAAATG TAGATAAAGG CGGCTTAAAA ATTAGTTTAC ATCTTCCCAG TTAG
 
Protein sequence
MLLPISGLFS HLQFKLFSYF AISLLAILLI ATAIESLVLN KLLTLPSTTQ EQLTELASEA 
KVFIRNSDIE GLTQWEKQQV FTLFILNNDL QALTKREMHP HFVFKLKYLK QLKQPMGDRV
QKPLIAVPLG KHLINNKRQE LTLVVQLNAA LHPAQQLSSS LWVIRTLVGF AVLVMFSSIL
SKYLITPLTH LQAGTQALAS GDLNTRIAQH FSTKEPEFYK LATEFDHMAE QVQQSMLNQQ
RLLRDVSHEL RTPLARQELA LHLLSKQLND SHLTLLHRLE HENAEMSALI NTMLNFSRLN
NAYIDLNIQA VPINEIRSRS LNDIEFEAKA GQTIIWHSQP DTVTLITDVG LLTRAIDNVL
RNALKYAGEC CTIEVSYIKS PNGVVLTIMD DGPGIEHSEL ETVFNPFTRM DDARHSSQGG
YGLGLAIVKQ SMKLLGGEAV AENVDKGGLK ISLHLPS