| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2180 |
|---|
| Symbol | |
|---|
| ID | 6116450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2672739 |
|---|
| End bp | 2675831 |
|---|
| Gene Length | 3093 bp |
|---|
| Protein Length | 1030 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641633688 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_001760557 |
|---|
| Protein GI | 170726531 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000146343 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.137669 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATATTAA CTGATGTATC GGTAAAGCGA CCCGTATTTG CTTCGGTTAT CAGCATACTG
TTAATTCTTT TTGGTCTGGT GGCTTTTGAT AAATTGCCCT TGAGAGAGTA TCCCAATATT
GATCCGCCAG TGGTGTCGAT TCAAACTAAC TACCGAGGGG CGAGTGCTTC TGTGGTGGAG
AGTCGTATCA CTCAGCTGGT GGAGGATAGG ATCAGTGGTG TAGAGGGGAT CCGCCATATT
AACTCCTCTA GCAGCGATGG CCGTTCTACA GTGACCTTAG AGTTTGACGT TGGCAGGGAT
ATCGAAGCGG CAGCCAACGA TGTGAGAGAT AGGGTTTCAG GTTTGCTCAA CAACTTGCCT
GAGGAGGCTG AGCCCCCAGA GGTACAAAAA GCCAATGGCG GCGATGAAGT GATCATGTGG
CTGAATCTGG TATCCGATCA GATGACCACT TTGCAGCTGA CCGATTACGC CAGACGATAC
CTGACTGATC GTCTGTCAGT TATTGATGGT GTGGCTAACA TTCGTATCGG TGGCGGTAAG
GTTTATGCCA TGCGTGTCTG GATCGATAGA CAAGCTTTAG CCGCTAGAAA TTTAACCGTC
GCAGATATTG AGAAGGTGCT GAGATCTGAA AATGTTGAGC TTCCAGCAGG TTCAGTTGAG
TCTAAAGAGC GACATTTCAC CGTTCGGGTT GAGCGTAGTT TTCGAAACCC CGATGATTTT
GCCAACCTCG TACTCTCACA GGGGGAGGAT GGCTACCTGA TAAAGTTGGG TGATGTTGCT
AAGGTGAGTG TTGGCGCTGA GGAGGAGAGG ATCACCTTTA GAGGCAACCG GGAAGCCATG
ATAGGCCTAG GGATCACTAA GCAGTCGACC GCGAATACCT TAGAGGTGGC AAGGGCTGCT
AATGCTCTAG TTGACGTGAT TAATCCAACC TTGCCTGCCG GTATGGAGAT AAAGCGCTCC
TATGACAGCT CAGTGTTTAT TGAAGCCTCG GTGAAGGAGG TGTACCAAAC ATTGTTTATT
GCGATGACCT TAGTGATTAT CGTTATCTAC CTTTTCCTCG GTAGTGTTCG TGCCATGTTG
ATCCCTGCCA TCACAGTGCC TGTTTCCTTG ATGGCCACCT TTATTATTCT TTACCTCTTA
GGTTATACGA TTAACTTGCT AACCTTGTTA GCCATGATTT TAGCCATTGG CATGGTGGTG
GATGATGCGA TTGTGGTGCT GGAAAATATT CACAGGCGGA TTGAGGAGGG AGACACTCCT
CTAAAAGCGG CTTATCTCGG TGCCCGTGAA GTTGCCTTTG CTGTGGTGGC AACGACTTTA
GTTTTAGTTG CTGTATTTAT GCCGATTACT TTCCTTGAGG GAGATTTAGG TAAACTGTTT
AAGGAGTTTG CGGTGGCCAT GAGTGCTGCG GTGATCTTCT CGAGTATCGT AGCACTGACT
CTAAGTCCAA TGATGTGCTC AAAGCTTCTC AAACCAGCAG GAGAGGATCC ATGGTTGGTA
AGACAAGTCG ATGCTGGAAT GAACTTTGTG ACCGAGCATT ACAAGCGCAT ACTCACTAAA
GCCATGGCTC ATCCATACCT TATAGGCTCA CTGGTGGTTG TTGCTTTGGC TTGCAGTGCG
CTGCTAGTTA AAGAGGTACC GCAAGAGTTT GCACCAAAAG AGGATAGAGG CTCTATGTTC
CTCATCGTCA ATGGTCCTCA GGGGGCTAGT TTTGAGTATA TCGAGTCCTA TATGGATGAG
ATTGAAACAC GCTTAATGCC CTTGGTGGAA GCTGGTGAGA TCAAACGGCT ATTAATTCGC
GCGCCAAGAG GGTTTGGTAG TGTGGCTAAC TTCTCTAACG GTATGGCTAT TATCGTACTG
GAAGATTGGT CAGTGAGACG AAGCGCTAAT GAGATCACCG GAGATATTCG TAGAAGGTTA
GGGGATCTTG CGGGGGTGAG AGCGTTTCCT GTCATGAGGC AGGCATTTGG CCGCGGCGTG
GGTAAACCGG TACAGTTTGT ACTTGGCGGA CCTAGCTATG AAGAGCTGGC CAAATGGCGT
GATATTATTT TAGAAAAGGC AAAAGAAAAT CCAAACCTGG TCGGACTCGA TCACGATTAT
AAAGAGACTA AACCACAACT TAGGGTCATT ATTGATAAAG ACAGGGCGGC AGATCTTGGG
GTGTCAATCT CGCACATCGG CCGAACGTTA GAGTCGATGT TGGGTTCAAG ATTAGTGACG
ACGTTTATGC GTGATGGTGA AGAGTATGAT GTGATTATCG AAGGAAACAG AGATAACCAA
AATACAGCAT CAGATCTGGA AAATATCTAT GTTCGCTCCG ATAGGAGTCA AGCACTTATC
CCATTGACAA ACTTAGTGCA TGTAGAGGAG TTTGCCGATG CAAGTCAGCT CAATCGCTAC
AACCGAATGC GCGCTATCAC CTTAGAGGCG AACTTAGCTG ATGGGTATAG TTTGGGTGAG
GCGTTGACCT ACCTTAATGA ACTGACACAA ACCTATCTTC CCGCTGAAGC GGTGATCAGC
TATAAAGGGC AATCTTTGGA TTATCAGGAG TCGGGTAGTT CAATGTATTT CGTGTTTGTA
CTCGCACTGG GTATCGTCTT CTTAGTGCTT GCTGCGCAAT TTGAGAGTTA CGTGCATCCT
ATCGTGATCA TGCTAACCGT GCCATTGGCG ACCTTAGGAG CGCTAGTTGG CCTCTGGTTG
ACGGGCCAAA GTTTGAACAT CTATAGTCAG ATAGGGATCA TCATGCTGGT GGGCTTAGCG
GCTAAAAATG GCATATTGAT CGTGGAGTTT GCTAACCAGC TCAGGGATAA AGGGATTGAG
TTTGAACATG CAATTATTCA AGCATCATCT CAGCGTTTAA GACCGATTTT GATGACTGGG
ATCACCACCG CAGCTGGCGC GGTACCTTTG GTGCTTGCTC AAGGGGCAGG TGCTGAAACC
CGCTTTGTGA TAGGAGTTGT TGTGCTATCT GGTATTGTAT TGGCAACCCT GTTTACCATC
TTTATTATCC CAGTGGCTTA CTCCATGTTT GCTAAACATT CCGGTTCACC TGATGCGGTT
GCACAGGCAT TGGAGAGAGA ACTTAAGCAG TAG
|
|---|
| Protein sequence | MILTDVSVKR PVFASVISIL LILFGLVAFD KLPLREYPNI DPPVVSIQTN YRGASASVVE
SRITQLVEDR ISGVEGIRHI NSSSSDGRST VTLEFDVGRD IEAAANDVRD RVSGLLNNLP
EEAEPPEVQK ANGGDEVIMW LNLVSDQMTT LQLTDYARRY LTDRLSVIDG VANIRIGGGK
VYAMRVWIDR QALAARNLTV ADIEKVLRSE NVELPAGSVE SKERHFTVRV ERSFRNPDDF
ANLVLSQGED GYLIKLGDVA KVSVGAEEER ITFRGNREAM IGLGITKQST ANTLEVARAA
NALVDVINPT LPAGMEIKRS YDSSVFIEAS VKEVYQTLFI AMTLVIIVIY LFLGSVRAML
IPAITVPVSL MATFIILYLL GYTINLLTLL AMILAIGMVV DDAIVVLENI HRRIEEGDTP
LKAAYLGARE VAFAVVATTL VLVAVFMPIT FLEGDLGKLF KEFAVAMSAA VIFSSIVALT
LSPMMCSKLL KPAGEDPWLV RQVDAGMNFV TEHYKRILTK AMAHPYLIGS LVVVALACSA
LLVKEVPQEF APKEDRGSMF LIVNGPQGAS FEYIESYMDE IETRLMPLVE AGEIKRLLIR
APRGFGSVAN FSNGMAIIVL EDWSVRRSAN EITGDIRRRL GDLAGVRAFP VMRQAFGRGV
GKPVQFVLGG PSYEELAKWR DIILEKAKEN PNLVGLDHDY KETKPQLRVI IDKDRAADLG
VSISHIGRTL ESMLGSRLVT TFMRDGEEYD VIIEGNRDNQ NTASDLENIY VRSDRSQALI
PLTNLVHVEE FADASQLNRY NRMRAITLEA NLADGYSLGE ALTYLNELTQ TYLPAEAVIS
YKGQSLDYQE SGSSMYFVFV LALGIVFLVL AAQFESYVHP IVIMLTVPLA TLGALVGLWL
TGQSLNIYSQ IGIIMLVGLA AKNGILIVEF ANQLRDKGIE FEHAIIQASS QRLRPILMTG
ITTAAGAVPL VLAQGAGAET RFVIGVVVLS GIVLATLFTI FIIPVAYSMF AKHSGSPDAV
AQALERELKQ
|
|---|
| |