Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1908 |
Symbol | |
ID | 6116171 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 2349792 |
End bp | 2350487 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641633411 |
Product | aspartate racemase |
Protein accession | YP_001760287 |
Protein GI | 170726261 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1794] Aspartate racemase |
TIGRFAM ID | [TIGR00035] aspartate racemase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.400117 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAAACGA TTGGATTGAT TGGCGGTATG AGTTGGGAGT CGACCCTTAG CTATTATCAA GCACTTAACC TAGGGGTTAA AGCTGAACTT GGCGGGTTAC ATAGTGCGAA AATAGTACTG GTTAGTGTTG ATTTTGCTGA GATTGAGAAG CTTCAGCATC TTGGAGAGTG GGACAAGACA GCAGCGATCT TATCTGAAGC TGCAAGCGGG TTAGAAGCGG CGAACGCTGA CTTTTTCATG ATCTGTACTA ATACTATGCA CAAGGTTGCA GATGAGGTGC AGGCTAAAGT GAACATCCCG CTACTGCACA TTGCTGATGC AACTGCTGAG TTATTGGTTA AAGATGGTAT CAAGAAAGTG GGGTTATTAG GCACCCAATT TACCATGGCT GAATCCTTTT ATAAGGGAAG GCTGACGGAA AAATACGGTA TAGAGGTACT AACCCCAAGT GATGATGACC AGTCAATCAT TCATCGAGTT ATCTATGATG AGCTTTGTCA AGGTGTGGTA AATGCACAAT CCCGATCTGC CTATGTGGAG ATTATTGAAA AGCTGAGGGA CAATGGCGCT GATGCGGTGA TACTAGGTTG TACCGAGATA GCTATGTTAG TCAAAGAAAC AGACACCAAT GTGCCACTTT ATGACACCAC CGCTATTCAT GCTGAGGCTG CTGTTAAAAT AGCATTAGAT TGTTGA
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Protein sequence | MKTIGLIGGM SWESTLSYYQ ALNLGVKAEL GGLHSAKIVL VSVDFAEIEK LQHLGEWDKT AAILSEAASG LEAANADFFM ICTNTMHKVA DEVQAKVNIP LLHIADATAE LLVKDGIKKV GLLGTQFTMA ESFYKGRLTE KYGIEVLTPS DDDQSIIHRV IYDELCQGVV NAQSRSAYVE IIEKLRDNGA DAVILGCTEI AMLVKETDTN VPLYDTTAIH AEAAVKIALD C
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