| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1256 |
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| Symbol | trmD |
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| ID | 6115491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1593803 |
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| End bp | 1594549 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641632739 |
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| Product | tRNA (guanine-N(1)-)-methyltransferase |
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| Protein accession | YP_001759643 |
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| Protein GI | 170725617 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000423136 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000564975 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGTGGTTAG GGGTTGTAAC CCTGTTTCCA GAGATGTTTC GTGCCGTCAC AGACTTTGGA
GTAACGGGTC GGGCCGTTAA CAAGGGCCTG TTAGAGTTGC AAACGTGGAA TCCAAGAGAT
TTCACCCATG ATAAACATAA GACAGTGGAT GATCGCCCCT ATGGTGGTGG CCCTGGCATG
TTGATGATGG TGCAACCTTT ACGCGACGCT ATTCATGCTG CGAAAGCGGC AGCTGGCGAT
AGTGCGAAGG TGATTTATCT CTCTCCTCAG GGGCGCAAGC TGACACAGCA AGGCGTCGAA
GAGTTAGCTA AATCGGACAG TTTGATTTTG GTATGTGGTC GATACGAAGG TGTTGATGAG
CGTATTATTC AAACTGAAGT GGATGAGGAG TGGTCAATTG GAGATTACGT GCTTTCGGGC
GGTGAACTTC CAGCGATGAC TCTTATCGAT TCAGTATCAA GATTGGTACC GGGCGTACTC
GGTAAGCAAG CTTCGGCAGA GCAGGACTCC TTCTCTGACG GTTTATTGGA TTGTCCCCAC
TATACTCGCC CTGAAACCTT GGATGGTTTA GATGTACCAG CAGTCTTGTT AAGTGGTAAC
CACGAACATA TTAGACGCTG GCGTCTACAA CAAAGTCTCG GTAGAACTTT GTTAAGGCGA
CCAGAATTAT TAGAAAATCT AGCTCTGACT GACGAACAAA CGAAGCTTTT AGCTCAGTTT
GTTGATTCAA CAAATGAGTG TGGATAG
|
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| Protein sequence | MWLGVVTLFP EMFRAVTDFG VTGRAVNKGL LELQTWNPRD FTHDKHKTVD DRPYGGGPGM
LMMVQPLRDA IHAAKAAAGD SAKVIYLSPQ GRKLTQQGVE ELAKSDSLIL VCGRYEGVDE
RIIQTEVDEE WSIGDYVLSG GELPAMTLID SVSRLVPGVL GKQASAEQDS FSDGLLDCPH
YTRPETLDGL DVPAVLLSGN HEHIRRWRLQ QSLGRTLLRR PELLENLALT DEQTKLLAQF
VDSTNECG
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