| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swol_1425 |
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| Symbol | secD |
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| ID | 4282916 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008346 |
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| Strand | - |
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| Start bp | 1635859 |
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| End bp | 1637070 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638138305 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_754103 |
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| Protein GI | 114566949 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000290493 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAGTTGC AAAAAAATTT CAGCGTCGCA GTAATTTTAG CCATTATTGT AGCCCTTGGC
GCCTTGTCCT ATTTTACCTA CCAACCAATT TTGAAAAACT TGAATCTTGG ATTGGATCTA
AGGGGCGGGC TGCATGTGGT TTTGGAGGCC CAGGAAAAAG AGGGGCAGAA GATAAGTGCC
GATACTATAA ACAAGGCCGT AGGTATACTC AGAAACCGGG TGGACAAGCT GGGGGTCAGT
GAACCGCTGA TTTATCCCCA GGGTGAACGC CGGGTAGTGG TGGAATTGGC CGGAATAGAT
GATCCGGAAG AAGCGGTGAA CATAATTAAA AACACGGCTG AGCTTGAATT CTGGGATGAA
AGCGGCAAGG TGCTGGTAAC CGGAAAACAC CTGAAGGAAG CGCAGGCCAG AGCCGGCAGC
GAAGGCCAGG GTTTTGAAGT TGCCATTGAC TTTGATAAAG AAGGGGCCAA GCTTTTTGCT
GATGCTACCA CCGCCAATGT CAATAAACCG CTGATGATAG TTATTGATGG CAAGGTCATC
AGTGCTCCTA CTGTATCCGG TCCGATAACC GATGGAAGCG CCAGAATAAC CGGTAACTTT
ACCGCCAAGG AAGCGGAGAA CCTGGCAGTA TTACTGCGTT CCGGTGCTTT ACCGGTTTCA
TTTAAGATAC TGGAGAAGAG GACGGTTGGT CCTACCCTGG GAAGTGATTC CTTGAGTAAG
AGTGTGAAAG CCGGAATCGC CGGTCTTATT GCCATCTTGA TTTTCATGCT GGGGTATTAT
CGTTTGCCTG GGTTTATAGC CGATATTTCC ATAGTTCTTT ATTCGATTCT GGTTTTAGGA
ACCATGACCC TCTTTGGTGC AGTATTAACC CTGCCGGGGA TAGCGGCCTT CGTGTTATCT
ATCGGCATGG CGGTTGATGC TAATATCATT ATTTACGAGA GAATCAAGGA AGAATTGCGC
TGGGGCAAGA CCTTGAAGGC TGCCATTGAA GCTGGATTTA ATCGCGCCTT CTGGACCATA
TTCGATGCTA ACCTGACCAC CTTGATTGCC GCTTTCGTCC TGCTCTATTT CGGCAGCGGG
CCTATCAAGG GGTTTGCCGT AACTCTTTCT ATAGGTATTA TTGCCAGTAT GCTGGTAGTA
CTTACCTTTA CCCGCTATTT GCTGGTATTA TCCGCTGATT TGACCAAGAA TCATAAACTA
TATGGGGTAT AA
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| Protein sequence | MKLQKNFSVA VILAIIVALG ALSYFTYQPI LKNLNLGLDL RGGLHVVLEA QEKEGQKISA
DTINKAVGIL RNRVDKLGVS EPLIYPQGER RVVVELAGID DPEEAVNIIK NTAELEFWDE
SGKVLVTGKH LKEAQARAGS EGQGFEVAID FDKEGAKLFA DATTANVNKP LMIVIDGKVI
SAPTVSGPIT DGSARITGNF TAKEAENLAV LLRSGALPVS FKILEKRTVG PTLGSDSLSK
SVKAGIAGLI AILIFMLGYY RLPGFIADIS IVLYSILVLG TMTLFGAVLT LPGIAAFVLS
IGMAVDANII IYERIKEELR WGKTLKAAIE AGFNRAFWTI FDANLTTLIA AFVLLYFGSG
PIKGFAVTLS IGIIASMLVV LTFTRYLLVL SADLTKNHKL YGV
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