Gene Swit_3316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3316 
Symbol 
ID5199837 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp3648225 
End bp3650051 
Gene Length1827 bp 
Protein Length608 aa 
Translation table11 
GC content71% 
IMG OID640582861 
Productlong-chain-acyl-CoA synthetase 
Protein accessionYP_001263800 
Protein GI148556218 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.390941 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000571786 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAACCCT TCGTCCTGCC GTCCCGCGAG GAATCGATGC AGCGGCTGAT GCGCGGCTAT 
GCCCGCGTCG CCGGCTTCAC CCGCGACCTC GCTTATTCGG TCGCCGACCG GATCGAGGAG
CGCGCCGCCG ACGCCGCCGA CACGCCGTTC ATCCTGTTCG AGGACCAGTC GATCAGCTTC
GCGGCGATGA ACCGGCGCGC CAACCGGGTG GCGCACGCCG CGCGGGCGGC GGGGCTGGGG
AAGGGCGACG TCGTCGCGCT GCTGATGCTC AACCGGCCCG AATTCGTGAC GATCTGGCTG
GGCCTCGCCA AGATCGGCGT CGTCACCGCG CTGCTCAACA CCGGCGCGAC GGGCGAGGTG
CTGGGCCATG CGCTGCGCCA GGTCGACGCC CGCGCGCTGA TCGTCGGATC AGAGCTGGCG
GCGACGGTCG AACGGATGGC CCCCGACGCG CTGCCGCCGC TGCTGTTCGA GCAGTCGGAG
ACGGGCGCGG ACCGATCGGC CCATGGCTGG CGCGACCTCG ACGCGGCGAT GGCCGGGGCG
CGGGACGACG ATCCGCCGCG TGACGCGCGG GCGGGCGTGG TGCTCGCCGA TCCGCTCTAC
CTGATCTTCA CCTCGGGGAC GACCGGCCTG CCCAAGGCGG CGCGGATGAG CCACATGCGC
TTCCTCAACG CCGGCGAGAT GATGGCCGGG CTGATGGCGT TCGGCGCGGA CGACGTCCTC
TACTGCGTCC TGCCGCTCTA CCATGGCGCG GGCGGCATGG TGGTGCCGTC GGTGGCGCTG
GCGACCGGCC GGCCCTTCGT GCTGCGCCGC AAGTTCAGCC GCTCGGGCTT CTGGCCCGAC
GTGCGCCGGC ACCGGATCAC GGCGGTCTAT TATATCGGCG AGATCGTCCG CTACCTGCTC
GCGGCCCCGC CGGCGCCCGG CGACCGCGAC CACAGCCTGC GGGTGATGAC CGGGGCGGGG
CTGAAGCCGG ACCTGTGGGA GGCGTTCGCC GACCGCTTCG GCGTCGACGC CATCATCGAG
GGGCTCGGAT CGACCGAGGC CAATTACGGG ATCACCAATG TCGACGGGCG GCCCGGCTCG
GTCGGGCGCC TGCCCTATCC CCGGGCGACC AACATCCGCA TCCTCAAATG GGACGTCGCG
GCGGGCGAGC ATGTCCGCGA CGCCGCCGAC AACCCTGTCG AGGCGGGGCC GCACGAGGTG
GGCGAGCTGG TCGCCGAGAT CCTCGACGGC AACGGCGTCG CCGGCTTCTT CGAGGGCTAT
ACCTCGGCCG AGGCGACCGA GGCGAAGCTG CTGCGCGACC TGTTCCGGCC GGGCGACCGC
TGGTTCCGCT CGGGCGACCT CGTCCGCTTC GACGAGGAGG ATTATTTCTT CTTCGTCGAC
CGGGTCGGCG ACACCTTCCG CTGGAAGAGC GAGAATGTCT CGACCGCCGA GGTGGAGACG
GTGCTGTCGG GCTTTCCGGG GCCATCGGTC GTCAACGTCT ACGGCGTCCG CGTGCCCGGC
ACCGAGGGTC GCGCCGGCAT GGTCGCGCTG ACCTATGGCG ACGGCGCGGC GTTCGATCCG
CAGGGCTTCC ACGCCTTCGC CGTCGAGCAT CTCGCCGCCT ATGCGGTGCC GCTGTTCGTG
CGGCTGTCGG CGACCGCCGA GATGACCACC ACCTTCAAGC TGCGCAAGGT CGACCTCCAG
CGCGAAGGCT ATGACCCGGC GGCGGCCAAA GGCGACCGGC TCTACGTCGC CGACCCCGCG
GCCGGCCGCT ACGTCCCGCT GACCGGCGAG GCGCTCGCCC GGCTCGGCAT CCCGCCCTTC
GAAGGAGCAT CCGGCGATGC ACGTTGA
 
Protein sequence
MKPFVLPSRE ESMQRLMRGY ARVAGFTRDL AYSVADRIEE RAADAADTPF ILFEDQSISF 
AAMNRRANRV AHAARAAGLG KGDVVALLML NRPEFVTIWL GLAKIGVVTA LLNTGATGEV
LGHALRQVDA RALIVGSELA ATVERMAPDA LPPLLFEQSE TGADRSAHGW RDLDAAMAGA
RDDDPPRDAR AGVVLADPLY LIFTSGTTGL PKAARMSHMR FLNAGEMMAG LMAFGADDVL
YCVLPLYHGA GGMVVPSVAL ATGRPFVLRR KFSRSGFWPD VRRHRITAVY YIGEIVRYLL
AAPPAPGDRD HSLRVMTGAG LKPDLWEAFA DRFGVDAIIE GLGSTEANYG ITNVDGRPGS
VGRLPYPRAT NIRILKWDVA AGEHVRDAAD NPVEAGPHEV GELVAEILDG NGVAGFFEGY
TSAEATEAKL LRDLFRPGDR WFRSGDLVRF DEEDYFFFVD RVGDTFRWKS ENVSTAEVET
VLSGFPGPSV VNVYGVRVPG TEGRAGMVAL TYGDGAAFDP QGFHAFAVEH LAAYAVPLFV
RLSATAEMTT TFKLRKVDLQ REGYDPAAAK GDRLYVADPA AGRYVPLTGE ALARLGIPPF
EGASGDAR