Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3316 |
Symbol | |
ID | 5199837 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 3648225 |
End bp | 3650051 |
Gene Length | 1827 bp |
Protein Length | 608 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640582861 |
Product | long-chain-acyl-CoA synthetase |
Protein accession | YP_001263800 |
Protein GI | 148556218 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.390941 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000571786 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAAACCCT TCGTCCTGCC GTCCCGCGAG GAATCGATGC AGCGGCTGAT GCGCGGCTAT GCCCGCGTCG CCGGCTTCAC CCGCGACCTC GCTTATTCGG TCGCCGACCG GATCGAGGAG CGCGCCGCCG ACGCCGCCGA CACGCCGTTC ATCCTGTTCG AGGACCAGTC GATCAGCTTC GCGGCGATGA ACCGGCGCGC CAACCGGGTG GCGCACGCCG CGCGGGCGGC GGGGCTGGGG AAGGGCGACG TCGTCGCGCT GCTGATGCTC AACCGGCCCG AATTCGTGAC GATCTGGCTG GGCCTCGCCA AGATCGGCGT CGTCACCGCG CTGCTCAACA CCGGCGCGAC GGGCGAGGTG CTGGGCCATG CGCTGCGCCA GGTCGACGCC CGCGCGCTGA TCGTCGGATC AGAGCTGGCG GCGACGGTCG AACGGATGGC CCCCGACGCG CTGCCGCCGC TGCTGTTCGA GCAGTCGGAG ACGGGCGCGG ACCGATCGGC CCATGGCTGG CGCGACCTCG ACGCGGCGAT GGCCGGGGCG CGGGACGACG ATCCGCCGCG TGACGCGCGG GCGGGCGTGG TGCTCGCCGA TCCGCTCTAC CTGATCTTCA CCTCGGGGAC GACCGGCCTG CCCAAGGCGG CGCGGATGAG CCACATGCGC TTCCTCAACG CCGGCGAGAT GATGGCCGGG CTGATGGCGT TCGGCGCGGA CGACGTCCTC TACTGCGTCC TGCCGCTCTA CCATGGCGCG GGCGGCATGG TGGTGCCGTC GGTGGCGCTG GCGACCGGCC GGCCCTTCGT GCTGCGCCGC AAGTTCAGCC GCTCGGGCTT CTGGCCCGAC GTGCGCCGGC ACCGGATCAC GGCGGTCTAT TATATCGGCG AGATCGTCCG CTACCTGCTC GCGGCCCCGC CGGCGCCCGG CGACCGCGAC CACAGCCTGC GGGTGATGAC CGGGGCGGGG CTGAAGCCGG ACCTGTGGGA GGCGTTCGCC GACCGCTTCG GCGTCGACGC CATCATCGAG GGGCTCGGAT CGACCGAGGC CAATTACGGG ATCACCAATG TCGACGGGCG GCCCGGCTCG GTCGGGCGCC TGCCCTATCC CCGGGCGACC AACATCCGCA TCCTCAAATG GGACGTCGCG GCGGGCGAGC ATGTCCGCGA CGCCGCCGAC AACCCTGTCG AGGCGGGGCC GCACGAGGTG GGCGAGCTGG TCGCCGAGAT CCTCGACGGC AACGGCGTCG CCGGCTTCTT CGAGGGCTAT ACCTCGGCCG AGGCGACCGA GGCGAAGCTG CTGCGCGACC TGTTCCGGCC GGGCGACCGC TGGTTCCGCT CGGGCGACCT CGTCCGCTTC GACGAGGAGG ATTATTTCTT CTTCGTCGAC CGGGTCGGCG ACACCTTCCG CTGGAAGAGC GAGAATGTCT CGACCGCCGA GGTGGAGACG GTGCTGTCGG GCTTTCCGGG GCCATCGGTC GTCAACGTCT ACGGCGTCCG CGTGCCCGGC ACCGAGGGTC GCGCCGGCAT GGTCGCGCTG ACCTATGGCG ACGGCGCGGC GTTCGATCCG CAGGGCTTCC ACGCCTTCGC CGTCGAGCAT CTCGCCGCCT ATGCGGTGCC GCTGTTCGTG CGGCTGTCGG CGACCGCCGA GATGACCACC ACCTTCAAGC TGCGCAAGGT CGACCTCCAG CGCGAAGGCT ATGACCCGGC GGCGGCCAAA GGCGACCGGC TCTACGTCGC CGACCCCGCG GCCGGCCGCT ACGTCCCGCT GACCGGCGAG GCGCTCGCCC GGCTCGGCAT CCCGCCCTTC GAAGGAGCAT CCGGCGATGC ACGTTGA
|
Protein sequence | MKPFVLPSRE ESMQRLMRGY ARVAGFTRDL AYSVADRIEE RAADAADTPF ILFEDQSISF AAMNRRANRV AHAARAAGLG KGDVVALLML NRPEFVTIWL GLAKIGVVTA LLNTGATGEV LGHALRQVDA RALIVGSELA ATVERMAPDA LPPLLFEQSE TGADRSAHGW RDLDAAMAGA RDDDPPRDAR AGVVLADPLY LIFTSGTTGL PKAARMSHMR FLNAGEMMAG LMAFGADDVL YCVLPLYHGA GGMVVPSVAL ATGRPFVLRR KFSRSGFWPD VRRHRITAVY YIGEIVRYLL AAPPAPGDRD HSLRVMTGAG LKPDLWEAFA DRFGVDAIIE GLGSTEANYG ITNVDGRPGS VGRLPYPRAT NIRILKWDVA AGEHVRDAAD NPVEAGPHEV GELVAEILDG NGVAGFFEGY TSAEATEAKL LRDLFRPGDR WFRSGDLVRF DEEDYFFFVD RVGDTFRWKS ENVSTAEVET VLSGFPGPSV VNVYGVRVPG TEGRAGMVAL TYGDGAAFDP QGFHAFAVEH LAAYAVPLFV RLSATAEMTT TFKLRKVDLQ REGYDPAAAK GDRLYVADPA AGRYVPLTGE ALARLGIPPF EGASGDAR
|
| |